Task 38699438

Name test_824-GPUGRID_TEST_ATM_40STEP_20261023-33-40-RND3280_0
Workunit 31639841
Created 4 Nov 2026, 7:57:35 UTC
Sent 4 Nov 2026, 7:57:37 UTC
Report deadline 9 Nov 2026, 7:57:37 UTC
Received 4 Nov 2026, 9:00:41 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 596137
Run time 1 hours 2 min 2 sec
CPU time 58 min 2 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 15,670.82 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 700.57 MB
Peak swap size 3.86 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
08:59:56 (6480): wrapper (7.9.26016): starting
08:59:56 (6480): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
08:59:59 (6480): Library/usr/bin/tar.exe exited; CPU time 0.000000
08:59:59 (6480): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
09:59:57 (6480): C:/Windows/system32/cmd.exe exited; CPU time 3482.687500
09:59:57 (6480): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 41385765 bytes.
Dumping objects ->
{3835420} normal block at 0x0000020BEB5D7DB0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835409} normal block at 0x0000020BEB5D7FE0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835398} normal block at 0x0000020BEB5D7560, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835387} normal block at 0x0000020BEB5D7790, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835376} normal block at 0x0000020BE9AAB160, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835345} normal block at 0x0000020BEB57B120, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835332} normal block at 0x0000020BE9AA71A0, 8 bytes long.
 Data: <  n&#235;    > 00 00 6E EB 0B 02 00 00 
{3833953} normal block at 0x0000020BE9AA7060, 8 bytes long.
 Data: <pe]&#235;    > 70 65 5D EB 0B 02 00 00 
..\zip\boinc_zip.cpp(122) : {308} normal block at 0x0000020BE9AAC2C0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x0000020BE9A95B00, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{292} normal block at 0x0000020BE9AB2270, 16 bytes long.
 Data: <(7&#171;&#233;            > 28 37 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000020BE9AB2AE0, 16 bytes long.
 Data: < 7&#171;&#233;            > 00 37 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000020BE9AAC5E0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{289} normal block at 0x0000020BE9AB2450, 16 bytes long.
 Data: <&#216;6&#171;&#233;            > D8 36 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x0000020BE9AB2090, 16 bytes long.
 Data: <&#176;6&#171;&#233;            > B0 36 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000020BE9AB2360, 16 bytes long.
 Data: < 6&#171;&#233;            > 88 36 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x0000020BE9AB2A40, 16 bytes long.
 Data: <`6&#171;&#233;            > 60 36 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000020BE9AAB5C0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{284} normal block at 0x0000020BE9AB29F0, 16 bytes long.
 Data: < Z&#169;&#233;            > 98 5A A9 E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000020BE9AACC40, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{282} normal block at 0x0000020BE9AB2220, 16 bytes long.
 Data: <pZ&#169;&#233;            > 70 5A A9 E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000020BE9AB2040, 16 bytes long.
 Data: <HZ&#169;&#233;            > 48 5A A9 E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000020BE9AB2950, 16 bytes long.
 Data: < Z&#169;&#233;            > 20 5A A9 E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000020BE9AB2EF0, 16 bytes long.
 Data: <&#248;Y&#169;&#233;            > F8 59 A9 E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x0000020BE9AB28B0, 16 bytes long.
 Data: <&#208;Y&#169;&#233;            > D0 59 A9 E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000020BE9AB2E50, 16 bytes long.
 Data: <&#168;Y&#169;&#233;            > A8 59 A9 E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000020BE9AAD2A0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{274} normal block at 0x0000020BE9AB2860, 16 bytes long.
 Data: < Y&#169;&#233;            > 80 59 A9 E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x0000020BE9A95980, 320 bytes long.
 Data: <`(&#171;&#233;    &#160;&#210;&#170;&#233;    > 60 28 AB E9 0B 02 00 00 A0 D2 AA E9 0B 02 00 00 
{272} normal block at 0x0000020BE9AB2E00, 16 bytes long.
 Data: <@6&#171;&#233;            > 40 36 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x0000020BE9AB2810, 16 bytes long.
 Data: < 6&#171;&#233;            > 18 36 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000020BE9AACB80, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{269} normal block at 0x0000020BE9AB2900, 16 bytes long.
 Data: <&#240;5&#171;&#233;            > F0 35 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000020BE9AACCA0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{267} normal block at 0x0000020BE9AB2EA0, 16 bytes long.
 Data: <85&#171;&#233;            > 38 35 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x0000020BE9AB2310, 16 bytes long.
 Data: < 5&#171;&#233;            > 10 35 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000020BE9AB2770, 16 bytes long.
 Data: <&#232;4&#171;&#233;            > E8 34 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000020BE9AB21D0, 16 bytes long.
 Data: <&#192;4&#171;&#233;            > C0 34 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x0000020BE9AB2630, 16 bytes long.
 Data: < 4&#171;&#233;            > 98 34 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000020BE9AB2540, 16 bytes long.
 Data: <p4&#171;&#233;            > 70 34 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x0000020BE9AB2DB0, 16 bytes long.
 Data: < &#179;&#170;&#233;            > 20 B3 AA E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x0000020BE9AAB320, 40 bytes long.
 Data: <&#176;-&#171;&#233;     &#177;W&#235;    > B0 2D AB E9 0B 02 00 00 20 B1 57 EB 0B 02 00 00 
{258} normal block at 0x0000020BE9AB27C0, 16 bytes long.
 Data: <P4&#171;&#233;            > 50 34 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x0000020BE9AB2720, 16 bytes long.
 Data: <(4&#171;&#233;            > 28 34 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x0000020BE9AAD120, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{255} normal block at 0x0000020BE9AB2180, 16 bytes long.
 Data: < 4&#171;&#233;            > 00 34 AB E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{254} normal block at 0x0000020BE9AB3400, 992 bytes long.
 Data: < !&#171;&#233;     &#209;&#170;&#233;    > 80 21 AB E9 0B 02 00 00 20 D1 AA E9 0B 02 00 00 
{90} normal block at 0x0000020BE9AAC760, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{89} normal block at 0x0000020BE9AA6B10, 16 bytes long.
 Data: <P&#181;&#170;&#233;            > 50 B5 AA E9 0B 02 00 00 00 00 00 00 00 00 00 00 
{88} normal block at 0x0000020BE9AAB550, 40 bytes long.
 Data: < k&#170;&#233;    `&#199;&#170;&#233;    > 10 6B AA E9 0B 02 00 00 60 C7 AA E9 0B 02 00 00 
{67} normal block at 0x0000020BE9AA6520, 16 bytes long.
 Data: < &#234;&#154;B&#246;           > 80 EA 9A 42 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000020BE9AA6980, 16 bytes long.
 Data: <@&#233;&#154;B&#246;           > 40 E9 9A 42 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000020BE9AA6390, 16 bytes long.
 Data: <&#248;W&#151;B&#246;           > F8 57 97 42 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000020BE9AA6AC0, 16 bytes long.
 Data: <&#216;W&#151;B&#246;           > D8 57 97 42 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000020BE9AA7010, 16 bytes long.
 Data: <P &#151;B&#246;           > 50 04 97 42 F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x0000020BE9AA6930, 16 bytes long.
 Data: <0 &#151;B&#246;           > 30 04 97 42 F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x0000020BE9AA6FC0, 16 bytes long.
 Data: <&#224; &#151;B&#246;           > E0 02 97 42 F6 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x0000020BE9AA7240, 16 bytes long.
 Data: <  &#151;B&#246;           > 10 04 97 42 F6 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x0000020BE9AA6F70, 16 bytes long.
 Data: <p &#151;B&#246;           > 70 04 97 42 F6 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x0000020BE9AA6F20, 16 bytes long.
 Data: < &#192;&#149;B&#246;           > 18 C0 95 42 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


©2026 Universitat Pompeu Fabra