Task 38699020

Name test_436-GPUGRID_TEST_ATM_40STEP_20261023-37-40-RND2298_0
Workunit 31639473
Created 3 Nov 2026, 10:57:32 UTC
Sent 3 Nov 2026, 10:57:37 UTC
Report deadline 8 Nov 2026, 10:57:37 UTC
Received 3 Nov 2026, 11:57:30 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 654981
Run time 24 min 40 sec
CPU time 22 min 29 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 30,293.55 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 707.11 MB
Peak swap size 3.95 GB
Peak disk usage 3.84 GB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
06:33:35 (10668): wrapper (7.9.26016): starting
06:33:35 (10668): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
06:33:36 (10668): Library/usr/bin/tar.exe exited; CPU time 0.000000
06:33:36 (10668): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\2\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\2\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
06:57:13 (10668): C:/Windows/system32/cmd.exe exited; CPU time 1349.843750
06:57:13 (10668): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 19701807 bytes.
Dumping objects ->
{3835210} normal block at 0x000001E7C21AFEA0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835199} normal block at 0x000001E7C0634D10, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835188} normal block at 0x000001E7C0634760, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835177} normal block at 0x000001E7C0634E60, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835166} normal block at 0x000001E7C0634CA0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835135} normal block at 0x000001E7C22274C0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835122} normal block at 0x000001E7C062F5E0, 8 bytes long.
 Data: <  &#148;&#192;&#231;   > 00 00 94 C0 E7 01 00 00 
{3833963} normal block at 0x000001E7C062F3B0, 8 bytes long.
 Data: <&#176;X+&#194;&#231;   > B0 58 2B C2 E7 01 00 00 
..\zip\boinc_zip.cpp(122) : {313} normal block at 0x000001E7C0631380, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x000001E7C06260E0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{297} normal block at 0x000001E7C0636090, 16 bytes long.
 Data: <Xfc&#192;&#231;           > 58 66 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x000001E7C0635E60, 16 bytes long.
 Data: <0fc&#192;&#231;           > 30 66 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x000001E7C062FA10, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{294} normal block at 0x000001E7C0635AF0, 16 bytes long.
 Data: < fc&#192;&#231;           > 08 66 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000001E7C0635AA0, 16 bytes long.
 Data: <&#224;ec&#192;&#231;           > E0 65 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000001E7C06362C0, 16 bytes long.
 Data: <&#184;ec&#192;&#231;           > B8 65 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x000001E7C0635820, 16 bytes long.
 Data: < ec&#192;&#231;           > 90 65 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000001E7C06347D0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{289} normal block at 0x000001E7C0636270, 16 bytes long.
 Data: <h&#231;b&#192;&#231;           > 68 E7 62 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000001E7C0630370, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{287} normal block at 0x000001E7C0635690, 16 bytes long.
 Data: <@&#231;b&#192;&#231;           > 40 E7 62 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000001E7C06354B0, 16 bytes long.
 Data: < &#231;b&#192;&#231;           > 18 E7 62 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000001E7C0635DC0, 16 bytes long.
 Data: <&#240;&#230;b&#192;&#231;           > F0 E6 62 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000001E7C06361D0, 16 bytes long.
 Data: <&#200;&#230;b&#192;&#231;           > C8 E6 62 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000001E7C0636040, 16 bytes long.
 Data: <&#160;&#230;b&#192;&#231;           > A0 E6 62 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000001E7C0635640, 16 bytes long.
 Data: <x&#230;b&#192;&#231;           > 78 E6 62 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001E7C062FFB0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{279} normal block at 0x000001E7C0635A50, 16 bytes long.
 Data: <P&#230;b&#192;&#231;           > 50 E6 62 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000001E7C062E650, 320 bytes long.
 Data: <PZc&#192;&#231;   &#176;&#255;b&#192;&#231;   > 50 5A 63 C0 E7 01 00 00 B0 FF 62 C0 E7 01 00 00 
{277} normal block at 0x000001E7C0636130, 16 bytes long.
 Data: <pec&#192;&#231;           > 70 65 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000001E7C0635780, 16 bytes long.
 Data: <Hec&#192;&#231;           > 48 65 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000001E7C062F9B0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{274} normal block at 0x000001E7C0636220, 16 bytes long.
 Data: < ec&#192;&#231;           > 20 65 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000001E7C0630310, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{272} normal block at 0x000001E7C06355F0, 16 bytes long.
 Data: <hdc&#192;&#231;           > 68 64 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000001E7C06355A0, 16 bytes long.
 Data: <@dc&#192;&#231;           > 40 64 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000001E7C0635460, 16 bytes long.
 Data: < dc&#192;&#231;           > 18 64 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000001E7C0635D20, 16 bytes long.
 Data: <&#240;cc&#192;&#231;           > F0 63 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000001E7C0636180, 16 bytes long.
 Data: <&#200;cc&#192;&#231;           > C8 63 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000001E7C0635FF0, 16 bytes long.
 Data: <&#160;cc&#192;&#231;           > A0 63 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000001E7C0635910, 16 bytes long.
 Data: < Ic&#192;&#231;           > 90 49 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000001E7C0634990, 40 bytes long.
 Data: < Yc&#192;&#231;   &#192;t"&#194;&#231;   > 10 59 63 C0 E7 01 00 00 C0 74 22 C2 E7 01 00 00 
{263} normal block at 0x000001E7C0635500, 16 bytes long.
 Data: < cc&#192;&#231;           > 80 63 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000001E7C0635730, 16 bytes long.
 Data: <Xcc&#192;&#231;           > 58 63 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000001E7C062F950, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{260} normal block at 0x000001E7C06356E0, 16 bytes long.
 Data: <0cc&#192;&#231;           > 30 63 63 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000001E7C0636330, 992 bytes long.
 Data: <&#224;Vc&#192;&#231;   P&#249;b&#192;&#231;   > E0 56 63 C0 E7 01 00 00 50 F9 62 C0 E7 01 00 00 
{95} normal block at 0x000001E7C062FA70, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{94} normal block at 0x000001E7C062ECD0, 16 bytes long.
 Data: <&#224;&#239;a&#192;&#231;           > E0 EF 61 C0 E7 01 00 00 00 00 00 00 00 00 00 00 
{93} normal block at 0x000001E7C061EFE0, 40 bytes long.
 Data: <&#208;&#236;b&#192;&#231;   p&#250;b&#192;&#231;   > D0 EC 62 C0 E7 01 00 00 70 FA 62 C0 E7 01 00 00 
{72} normal block at 0x000001E7C062EEB0, 16 bytes long.
 Data: < &#234;&#205;Y&#246;           > 80 EA CD 59 F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x000001E7C062F360, 16 bytes long.
 Data: <@&#233;&#205;Y&#246;           > 40 E9 CD 59 F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x000001E7C062F310, 16 bytes long.
 Data: <&#248;W&#202;Y&#246;           > F8 57 CA 59 F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000001E7C062ED20, 16 bytes long.
 Data: <&#216;W&#202;Y&#246;           > D8 57 CA 59 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000001E7C062F590, 16 bytes long.
 Data: <P &#202;Y&#246;           > 50 04 CA 59 F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000001E7C062F540, 16 bytes long.
 Data: <0 &#202;Y&#246;           > 30 04 CA 59 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000001E7C062F680, 16 bytes long.
 Data: <&#224; &#202;Y&#246;           > E0 02 CA 59 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000001E7C062E9B0, 16 bytes long.
 Data: <  &#202;Y&#246;           > 10 04 CA 59 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000001E7C062E910, 16 bytes long.
 Data: <p &#202;Y&#246;           > 70 04 CA 59 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000001E7C062EAF0, 16 bytes long.
 Data: < &#192;&#200;Y&#246;           > 18 C0 C8 59 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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