Task 38697034

Name test_643-GPUGRID_TEST_ATM_40STEP_20261023-26-40-RND4966_1
Workunit 31624112
Created 1 Nov 2026, 7:58:56 UTC
Sent 1 Nov 2026, 7:59:03 UTC
Report deadline 6 Nov 2026, 7:59:03 UTC
Received 1 Nov 2026, 8:36:56 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 593616
Run time 36 min 45 sec
CPU time 32 min 28 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 29,502.51 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 720.08 MB
Peak swap size 6.92 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
17:01:24 (61992): wrapper (7.9.26016): starting
17:01:24 (61992): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
17:01:26 (61992): Library/usr/bin/tar.exe exited; CPU time 0.000000
17:01:26 (61992): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
'DOSKEY' &#130;&#205;&#129;A&#147;&#224;&#149;&#148;&#131;R&#131;}&#131;&#147;&#131;h&#130;&#220;&#130;&#189;&#130;&#205;&#138;O&#149;&#148;&#131;R&#131;}&#131;&#147;&#131;h&#129;A
&#145;&#128;&#141;&#236;&#137;&#194;&#148;\&#130;&#200;&#131;v&#131;&#141;&#131;O&#131;&#137;&#131;&#128;&#130;&#220;&#130;&#189;&#130;&#205;&#131;o&#131;b&#131;` &#131;t&#131;@&#131;C&#131;&#139;&#130;&#198;&#130;&#181;&#130;&#196;&#148;F&#142;&#175;&#130;&#179;&#130;&#234;&#130;&#196;&#130;&#162;&#130;&#220;&#130;&#185;&#130;&#241;&#129;B
  WARNING: The script pyaml.exe is installed in 'D:\ProgramData\BOINC\slots\15\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'D:\ProgramData\BOINC\slots\15\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
17:36:25 (61992): C:/Windows/system32/cmd.exe exited; CPU time 1948.015625
17:36:25 (61992): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 39407999 bytes.
Dumping objects ->
{3835329} normal block at 0x00000200FF790840, 48 bytes long.
 Data: <PATH=D:\ProgramD> 50 41 54 48 3D 44 3A 5C 50 72 6F 67 72 61 6D 44 
{3835318} normal block at 0x00000200FF791330, 48 bytes long.
 Data: <HOME=D:\ProgramD> 48 4F 4D 45 3D 44 3A 5C 50 72 6F 67 72 61 6D 44 
{3835307} normal block at 0x00000200FF791090, 48 bytes long.
 Data: <TMP=D:\ProgramDa> 54 4D 50 3D 44 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835296} normal block at 0x00000200FF790BC0, 48 bytes long.
 Data: <TEMP=D:\ProgramD> 54 45 4D 50 3D 44 3A 5C 50 72 6F 67 72 61 6D 44 
{3835285} normal block at 0x00000200FF790E60, 48 bytes long.
 Data: <TMPDIR=D:\Progra> 54 4D 50 44 49 52 3D 44 3A 5C 50 72 6F 67 72 61 
{3835254} normal block at 0x00000200FF88A780, 64 bytes long.
 Data: <PATH=D:\ProgramD> 50 41 54 48 3D 44 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835241} normal block at 0x00000200FEC4DFE0, 8 bytes long.
 Data: <  )     > 00 00 29 FF 00 02 00 00 
{3834077} normal block at 0x00000200FEC4DB80, 8 bytes long.
 Data: <&#176;H      > B0 48 8E FF 00 02 00 00 
..\zip\boinc_zip.cpp(122) : {317} normal block at 0x00000200FEC528E0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{302} normal block at 0x00000200FEC47500, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{301} normal block at 0x00000200FEC56DA0, 16 bytes long.
 Data: < t&#197;             > 08 74 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{300} normal block at 0x00000200FEC56760, 16 bytes long.
 Data: < s&#197;             > E0 73 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{299} normal block at 0x00000200FEC509A0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{298} normal block at 0x00000200FEC568A0, 16 bytes long.
 Data: <&#184;s&#197;             > B8 73 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x00000200FEC568F0, 16 bytes long.
 Data: < s&#197;             > 90 73 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x00000200FEC56530, 16 bytes long.
 Data: <hs&#197;             > 68 73 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x00000200FEC56350, 16 bytes long.
 Data: <@s&#197;             > 40 73 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x00000200FEC51270, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{293} normal block at 0x00000200FEC56F80, 16 bytes long.
 Data: <  &#196;             > E8 98 C4 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x00000200FEC500A0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{291} normal block at 0x00000200FEC56CB0, 16 bytes long.
 Data: <&#192; &#196;             > C0 98 C4 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x00000200FEC566C0, 16 bytes long.
 Data: <  &#196;             > 98 98 C4 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x00000200FEC56D50, 16 bytes long.
 Data: <p &#196;             > 70 98 C4 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x00000200FEC56FD0, 16 bytes long.
 Data: <H &#196;             > 48 98 C4 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x00000200FEC56EE0, 16 bytes long.
 Data: <  &#196;             > 20 98 C4 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x00000200FEC56300, 16 bytes long.
 Data: <  &#196;             > F8 97 C4 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x00000200FEC50C40, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{283} normal block at 0x00000200FEC56F30, 16 bytes long.
 Data: <&#208; &#196;             > D0 97 C4 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x00000200FEC497D0, 320 bytes long.
 Data: <0o&#197;     @ &#197;     > 30 6F C5 FE 00 02 00 00 40 0C C5 FE 00 02 00 00 
{281} normal block at 0x00000200FEC57070, 16 bytes long.
 Data: < s&#197;             > 20 73 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x00000200FEC564E0, 16 bytes long.
 Data: < r&#197;             > F8 72 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x00000200FEC50940, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{278} normal block at 0x00000200FEC56E90, 16 bytes long.
 Data: <&#208;r&#197;             > D0 72 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x00000200FEC50B20, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{276} normal block at 0x00000200FEC56A30, 16 bytes long.
 Data: < r&#197;             > 18 72 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x00000200FEC56D00, 16 bytes long.
 Data: < q&#197;             > F0 71 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x00000200FEC565D0, 16 bytes long.
 Data: <&#200;q&#197;             > C8 71 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x00000200FEC56850, 16 bytes long.
 Data: < q&#197;             > A0 71 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x00000200FEC56440, 16 bytes long.
 Data: <xq&#197;             > 78 71 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x00000200FEC56B20, 16 bytes long.
 Data: <Pq&#197;             > 50 71 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x00000200FEC56170, 16 bytes long.
 Data: <  &#197;             > 90 11 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x00000200FEC51190, 40 bytes long.
 Data: <pa&#197;      &#167;      > 70 61 C5 FE 00 02 00 00 80 A7 88 FF 00 02 00 00 
{267} normal block at 0x00000200FEC562B0, 16 bytes long.
 Data: <0q&#197;             > 30 71 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x00000200FEC56A80, 16 bytes long.
 Data: < q&#197;             > 08 71 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x00000200FEC50160, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{264} normal block at 0x00000200FEC56120, 16 bytes long.
 Data: < p&#197;             > E0 70 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x00000200FEC570E0, 992 bytes long.
 Data: < a&#197;     ` &#197;     > 20 61 C5 FE 00 02 00 00 60 01 C5 FE 00 02 00 00 
{99} normal block at 0x00000200FEC50A60, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{98} normal block at 0x00000200FEC4E300, 16 bytes long.
 Data: <@ &#197;             > 40 10 C5 FE 00 02 00 00 00 00 00 00 00 00 00 00 
{97} normal block at 0x00000200FEC51040, 40 bytes long.
 Data: <  &#196;     ` &#197;     > 00 E3 C4 FE 00 02 00 00 60 0A C5 FE 00 02 00 00 
{74} normal block at 0x00000200FEC4E3F0, 16 bytes long.
 Data: <                > 80 EA 86 02 F6 7F 00 00 00 00 00 00 00 00 00 00 
{73} normal block at 0x00000200FEC4DD60, 16 bytes long.
 Data: <@               > 40 E9 86 02 F6 7F 00 00 00 00 00 00 00 00 00 00 
{72} normal block at 0x00000200FEC4E6C0, 16 bytes long.
 Data: < W              > F8 57 83 02 F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x00000200FEC4E620, 16 bytes long.
 Data: <&#216;W              > D8 57 83 02 F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x00000200FEC4E8A0, 16 bytes long.
 Data: <P               > 50 04 83 02 F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x00000200FEC4E0D0, 16 bytes long.
 Data: <0               > 30 04 83 02 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x00000200FEC4E670, 16 bytes long.
 Data: <                > E0 02 83 02 F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x00000200FEC4E080, 16 bytes long.
 Data: <                > 10 04 83 02 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x00000200FEC4DF40, 16 bytes long.
 Data: <p               > 70 04 83 02 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x00000200FEC4E1C0, 16 bytes long.
 Data: < &#192;              > 18 C0 81 02 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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