Task 38687512

Name test_620-GPUGRID_TEST_ATM_40STEP_20261023-23-40-RND1373_0
Workunit 31628899
Created 28 Oct 2026, 8:13:42 UTC
Sent 28 Oct 2026, 8:13:45 UTC
Report deadline 2 Nov 2026, 8:13:45 UTC
Received 28 Oct 2026, 8:26:22 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 654520
Run time 11 min 50 sec
CPU time 11 min 10 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 107,364.84 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 754.10 MB
Peak swap size 13.25 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
16:14:44 (25888): wrapper (7.9.26016): starting
16:14:44 (25888): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
16:14:45 (25888): Library/usr/bin/tar.exe exited; CPU time 0.000000
16:14:45 (25888): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
16:26:03 (25888): C:/Windows/system32/cmd.exe exited; CPU time 670.968750
16:26:03 (25888): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 11541459 bytes.
Dumping objects ->
{3835687} normal block at 0x0000028914119780, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835676} normal block at 0x0000028914119A90, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835665} normal block at 0x0000028914119400, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835654} normal block at 0x0000028914119C50, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835643} normal block at 0x00000289141191D0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835612} normal block at 0x0000028916209DD0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835599} normal block at 0x00000289140EE150, 8 bytes long.
 Data: <        > 00 00 0C 14 89 02 00 00 
{3834089} normal block at 0x00000289140EE010, 8 bytes long.
 Data: < 5&     > 20 35 26 16 89 02 00 00 
..\zip\boinc_zip.cpp(122) : {320} normal block at 0x00000289140F1480, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{305} normal block at 0x00000289140E6BA0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{304} normal block at 0x00000289140F5C40, 16 bytes long.
 Data: < l              > F8 6C 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{303} normal block at 0x00000289140F6780, 16 bytes long.
 Data: < l              > D0 6C 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{302} normal block at 0x00000289140EF610, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{301} normal block at 0x00000289140F5BA0, 16 bytes long.
 Data: < l              > A8 6C 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{300} normal block at 0x00000289140F5B50, 16 bytes long.
 Data: < l              > 80 6C 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{299} normal block at 0x00000289140F6640, 16 bytes long.
 Data: <Xl              > 58 6C 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x00000289140F67D0, 16 bytes long.
 Data: <0l              > 30 6C 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x00000289140F3AC0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{296} normal block at 0x00000289140F62D0, 16 bytes long.
 Data: < V              > F8 56 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x00000289140EF8B0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{294} normal block at 0x00000289140F60F0, 16 bytes long.
 Data: < V              > D0 56 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x00000289140F6000, 16 bytes long.
 Data: < V              > A8 56 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x00000289140F6730, 16 bytes long.
 Data: < V              > 80 56 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x00000289140F61E0, 16 bytes long.
 Data: <XV              > 58 56 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x00000289140F5BF0, 16 bytes long.
 Data: <0V              > 30 56 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x00000289140F6230, 16 bytes long.
 Data: < V              > 08 56 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x00000289140EF190, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{286} normal block at 0x00000289140F66E0, 16 bytes long.
 Data: < U              > E0 55 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x00000289140F55E0, 320 bytes long.
 Data: < f              > E0 66 0F 14 89 02 00 00 90 F1 0E 14 89 02 00 00 
{284} normal block at 0x00000289140F5AB0, 16 bytes long.
 Data: < l              > 10 6C 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x00000289140F65F0, 16 bytes long.
 Data: < k              > E8 6B 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x00000289140EF670, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{281} normal block at 0x00000289140F65A0, 16 bytes long.
 Data: < k              > C0 6B 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x00000289140EFAF0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{279} normal block at 0x00000289140F6820, 16 bytes long.
 Data: < k              > 08 6B 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x00000289140F60A0, 16 bytes long.
 Data: < j              > E0 6A 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x00000289140F6690, 16 bytes long.
 Data: < j              > B8 6A 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x00000289140F5F10, 16 bytes long.
 Data: < j              > 90 6A 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x00000289140F63C0, 16 bytes long.
 Data: <hj              > 68 6A 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x00000289140F5B00, 16 bytes long.
 Data: <@j              > 40 6A 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x00000289140F6550, 16 bytes long.
 Data: <0;              > 30 3B 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x00000289140F3B30, 40 bytes long.
 Data: <Pe              > 50 65 0F 14 89 02 00 00 D0 9D 20 16 89 02 00 00 
{270} normal block at 0x00000289140F6460, 16 bytes long.
 Data: < j              > 20 6A 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x00000289140F6280, 16 bytes long.
 Data: < i              > F8 69 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x00000289140EF550, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{267} normal block at 0x00000289140F5FB0, 16 bytes long.
 Data: < i              > D0 69 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x00000289140F69D0, 992 bytes long.
 Data: < _      P       > B0 5F 0F 14 89 02 00 00 50 F5 0E 14 89 02 00 00 
{102} normal block at 0x00000289140EF3D0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{101} normal block at 0x00000289140ED480, 16 bytes long.
 Data: < <              > F0 3C 0F 14 89 02 00 00 00 00 00 00 00 00 00 00 
{100} normal block at 0x00000289140F3CF0, 40 bytes long.
 Data: <                > 80 D4 0E 14 89 02 00 00 D0 F3 0E 14 89 02 00 00 
{77} normal block at 0x00000289140EDBB0, 16 bytes long.
 Data: <  Z             > 80 EA 5A D3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{76} normal block at 0x00000289140EE1F0, 16 bytes long.
 Data: <@ Z             > 40 E9 5A D3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{75} normal block at 0x00000289140EE240, 16 bytes long.
 Data: < WW             > F8 57 57 D3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{74} normal block at 0x00000289140EDDE0, 16 bytes long.
 Data: < WW             > D8 57 57 D3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{73} normal block at 0x00000289140EDF70, 16 bytes long.
 Data: <P W             > 50 04 57 D3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{72} normal block at 0x00000289140ED570, 16 bytes long.
 Data: <0 W             > 30 04 57 D3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x00000289140EDA20, 16 bytes long.
 Data: <  W             > E0 02 57 D3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x00000289140EDE80, 16 bytes long.
 Data: <  W             > 10 04 57 D3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x00000289140ED890, 16 bytes long.
 Data: <p W             > 70 04 57 D3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x00000289140ED4D0, 16 bytes long.
 Data: <  U             > 18 C0 55 D3 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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