Task 38687406

Name test_349-GPUGRID_TEST_ATM_40STEP_20261023-22-40-RND8978_0
Workunit 31628797
Created 28 Oct 2026, 7:38:58 UTC
Sent 28 Oct 2026, 7:39:02 UTC
Report deadline 2 Nov 2026, 7:39:02 UTC
Received 28 Oct 2026, 7:54:44 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 626084
Run time 13 min 28 sec
CPU time 11 min 44 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 82,578.99 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 732.92 MB
Peak swap size 13.14 GB
Peak disk usage 3.02 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
08:39:51 (16416): wrapper (7.9.26016): starting
08:39:51 (16416): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
08:39:52 (16416): Library/usr/bin/tar.exe exited; CPU time 0.000000
08:39:52 (16416): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
08:52:44 (16416): C:/Windows/system32/cmd.exe exited; CPU time 704.468750
08:52:44 (16416): called boinc_finish(0)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 10647509 bytes.
Dumping objects ->
{3835237} normal block at 0x0000021F716CDCE0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835226} normal block at 0x0000021F716CD570, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835215} normal block at 0x0000021F716CD500, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835204} normal block at 0x0000021F716CD3B0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835193} normal block at 0x0000021F6FA44F70, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835162} normal block at 0x0000021F71715F00, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835151} normal block at 0x0000021F7172EB50, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835148} normal block at 0x0000021F6FA3D810, 8 bytes long.
 Data: <  &#251;o    > 00 00 FB 6F 1F 02 00 00 
{3834544} normal block at 0x0000021F7172F2E0, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833963} normal block at 0x0000021F6FA3D5E0, 8 bytes long.
 Data: <&#208;&#228;&#177;o    > D0 E4 B1 6F 1F 02 00 00 
..\zip\boinc_zip.cpp(122) : {313} normal block at 0x0000021F6FA40FE0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x0000021F6FA365A0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{297} normal block at 0x0000021F6FA46210, 16 bytes long.
 Data: < j&#164;o            > 08 6A A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x0000021F6FA46440, 16 bytes long.
 Data: <&#224;i&#164;o            > E0 69 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x0000021F6FA3F1F0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{294} normal block at 0x0000021F6FA45C20, 16 bytes long.
 Data: <&#184;i&#164;o            > B8 69 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x0000021F6FA463F0, 16 bytes long.
 Data: < i&#164;o            > 90 69 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000021F6FA46580, 16 bytes long.
 Data: <hi&#164;o            > 68 69 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000021F6FA457C0, 16 bytes long.
 Data: <@i&#164;o            > 40 69 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000021F6FA44BF0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{289} normal block at 0x0000021F6FA45A40, 16 bytes long.
 Data: <&#184;U&#164;o            > B8 55 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x0000021F6FA3F730, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{287} normal block at 0x0000021F6FA45900, 16 bytes long.
 Data: < U&#164;o            > 90 55 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000021F6FA459F0, 16 bytes long.
 Data: <hU&#164;o            > 68 55 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000021F6FA45F90, 16 bytes long.
 Data: <@U&#164;o            > 40 55 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000021F6FA45BD0, 16 bytes long.
 Data: < U&#164;o            > 18 55 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000021F6FA45950, 16 bytes long.
 Data: <&#240;T&#164;o            > F0 54 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000021F6FA46350, 16 bytes long.
 Data: <&#200;T&#164;o            > C8 54 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000021F6FA3F4F0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{279} normal block at 0x0000021F6FA462B0, 16 bytes long.
 Data: <&#160;T&#164;o            > A0 54 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000021F6FA454A0, 320 bytes long.
 Data: <&#176;b&#164;o    &#240;&#244;&#163;o    > B0 62 A4 6F 1F 02 00 00 F0 F4 A3 6F 1F 02 00 00 
{277} normal block at 0x0000021F6FA46300, 16 bytes long.
 Data: < i&#164;o            > 20 69 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000021F6FA45B80, 16 bytes long.
 Data: <&#248;h&#164;o            > F8 68 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000021F6FA3F190, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{274} normal block at 0x0000021F6FA45F40, 16 bytes long.
 Data: <&#208;h&#164;o            > D0 68 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x0000021F6FA3F6D0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{272} normal block at 0x0000021F6FA459A0, 16 bytes long.
 Data: < h&#164;o            > 18 68 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x0000021F6FA45EA0, 16 bytes long.
 Data: <&#240;g&#164;o            > F0 67 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000021F6FA45E00, 16 bytes long.
 Data: <&#200;g&#164;o            > C8 67 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x0000021F6FA45B30, 16 bytes long.
 Data: <&#160;g&#164;o            > A0 67 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000021F6FA461C0, 16 bytes long.
 Data: <xg&#164;o            > 78 67 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000021F6FA45E50, 16 bytes long.
 Data: <Pg&#164;o            > 50 67 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000021F6FA45D10, 16 bytes long.
 Data: <0J&#164;o            > 30 4A A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000021F6FA44A30, 40 bytes long.
 Data: < ]&#164;o     _qq    > 10 5D A4 6F 1F 02 00 00 00 5F 71 71 1F 02 00 00 
{263} normal block at 0x0000021F6FA45860, 16 bytes long.
 Data: <0g&#164;o            > 30 67 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000021F6FA46260, 16 bytes long.
 Data: < g&#164;o            > 08 67 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x0000021F6FA3FBB0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{260} normal block at 0x0000021F6FA45A90, 16 bytes long.
 Data: <&#224;f&#164;o            > E0 66 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x0000021F6FA466E0, 992 bytes long.
 Data: < Z&#164;o    &#176;&#251;&#163;o    > 90 5A A4 6F 1F 02 00 00 B0 FB A3 6F 1F 02 00 00 
{95} normal block at 0x0000021F6FA3F070, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{94} normal block at 0x0000021F6FA3E210, 16 bytes long.
 Data: <&#192;I&#164;o            > C0 49 A4 6F 1F 02 00 00 00 00 00 00 00 00 00 00 
{93} normal block at 0x0000021F6FA449C0, 40 bytes long.
 Data: < &#226;&#163;o    p&#240;&#163;o    > 10 E2 A3 6F 1F 02 00 00 70 F0 A3 6F 1F 02 00 00 
{72} normal block at 0x0000021F6FA3E0D0, 16 bytes long.
 Data: < &#234;&#201;{&#247;           > 80 EA C9 7B F7 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x0000021F6FA3D770, 16 bytes long.
 Data: <@&#233;&#201;{&#247;           > 40 E9 C9 7B F7 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x0000021F6FA3DAE0, 16 bytes long.
 Data: <&#248;W&#198;{&#247;           > F8 57 C6 7B F7 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x0000021F6FA3D4A0, 16 bytes long.
 Data: <&#216;W&#198;{&#247;           > D8 57 C6 7B F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x0000021F6FA3D680, 16 bytes long.
 Data: <P &#198;{&#247;           > 50 04 C6 7B F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x0000021F6FA3D400, 16 bytes long.
 Data: <0 &#198;{&#247;           > 30 04 C6 7B F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000021F6FA3E300, 16 bytes long.
 Data: <&#224; &#198;{&#247;           > E0 02 C6 7B F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000021F6FA3E1C0, 16 bytes long.
 Data: <  &#198;{&#247;           > 10 04 C6 7B F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000021F6FA3D900, 16 bytes long.
 Data: <p &#198;{&#247;           > 70 04 C6 7B F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000021F6FA3DEA0, 16 bytes long.
 Data: < &#192;&#196;{&#247;           > 18 C0 C4 7B F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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