Task 38687044

Name test_401-GPUGRID_TEST_ATM_40STEP_20261023-18-40-RND8527_0
Workunit 31628450
Created 28 Oct 2026, 5:43:08 UTC
Sent 28 Oct 2026, 5:43:13 UTC
Report deadline 2 Nov 2026, 5:43:13 UTC
Received 28 Oct 2026, 9:26:17 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 618086
Run time 53 min 36 sec
CPU time 47 min 42 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 11,339.30 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 732.33 MB
Peak swap size 8.42 GB
Peak disk usage 3.11 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
01:34:44 (17768): wrapper (7.9.26016): starting
01:34:44 (17768): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
01:34:47 (17768): Library/usr/bin/tar.exe exited; CPU time 0.000000
01:34:47 (17768): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
02:25:50 (17768): C:/Windows/system32/cmd.exe exited; CPU time 2862.125000
02:25:50 (17768): called boinc_finish(0)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 58691945 bytes.
Dumping objects ->
{3835458} normal block at 0x0000023EB85ADEA0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835447} normal block at 0x0000023EB85ADCE0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835436} normal block at 0x0000023EB85AD500, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835425} normal block at 0x0000023EB67F5370, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835414} normal block at 0x0000023EB67F5300, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835383} normal block at 0x0000023EB85F5BF0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835372} normal block at 0x0000023EB860FE10, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835369} normal block at 0x0000023EB67ED990, 8 bytes long.
 Data: <  |&#182;>   > 00 00 7C B6 3E 02 00 00 
{3834654} normal block at 0x0000023EB860F520, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833965} normal block at 0x0000023EB67EE160, 8 bytes long.
 Data: <&#192;Fe&#184;>   > C0 46 65 B8 3E 02 00 00 
..\zip\boinc_zip.cpp(122) : {314} normal block at 0x0000023EB67F18E0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{299} normal block at 0x0000023EB67E73A0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{298} normal block at 0x0000023EB67F6270, 16 bytes long.
 Data: <&#168;p &#182;>           > A8 70 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x0000023EB67F6A90, 16 bytes long.
 Data: < p &#182;>           > 80 70 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x0000023EB67F0070, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{295} normal block at 0x0000023EB67F5FF0, 16 bytes long.
 Data: <Xp &#182;>           > 58 70 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x0000023EB67F6770, 16 bytes long.
 Data: <0p &#182;>           > 30 70 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x0000023EB67F6A40, 16 bytes long.
 Data: < p &#182;>           > 08 70 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000023EB67F5FA0, 16 bytes long.
 Data: <&#224;o &#182;>           > E0 6F 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000023EB67F55A0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{290} normal block at 0x0000023EB67F5F50, 16 bytes long.
 Data: <X\ &#182;>           > 58 5C 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x0000023EB67EFB30, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{288} normal block at 0x0000023EB67F69F0, 16 bytes long.
 Data: <0\ &#182;>           > 30 5C 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x0000023EB67F6130, 16 bytes long.
 Data: < \ &#182;>           > 08 5C 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000023EB67F5E60, 16 bytes long.
 Data: <&#224;[ &#182;>           > E0 5B 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000023EB67F69A0, 16 bytes long.
 Data: <&#184;[ &#182;>           > B8 5B 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000023EB67F5E10, 16 bytes long.
 Data: < [ &#182;>           > 90 5B 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000023EB67F60E0, 16 bytes long.
 Data: <h[ &#182;>           > 68 5B 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000023EB67EFF50, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{280} normal block at 0x0000023EB67F6B30, 16 bytes long.
 Data: <@[ &#182;>           > 40 5B 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000023EB67F5B40, 320 bytes long.
 Data: <0k &#182;>   P&#255;~&#182;>   > 30 6B 7F B6 3E 02 00 00 50 FF 7E B6 3E 02 00 00 
{278} normal block at 0x0000023EB67F6590, 16 bytes long.
 Data: <&#192;o &#182;>           > C0 6F 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x0000023EB67F6220, 16 bytes long.
 Data: < o &#182;>           > 98 6F 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000023EB67F05B0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{275} normal block at 0x0000023EB67F6310, 16 bytes long.
 Data: <po &#182;>           > 70 6F 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x0000023EB67F0790, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{273} normal block at 0x0000023EB67F6860, 16 bytes long.
 Data: <&#184;n &#182;>           > B8 6E 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x0000023EB67F6040, 16 bytes long.
 Data: < n &#182;>           > 90 6E 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x0000023EB67F5F00, 16 bytes long.
 Data: <hn &#182;>           > 68 6E 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000023EB67F6810, 16 bytes long.
 Data: <@n &#182;>           > 40 6E 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x0000023EB67F6360, 16 bytes long.
 Data: < n &#182;>           > 18 6E 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000023EB67F6540, 16 bytes long.
 Data: <&#240;m &#182;>           > F0 6D 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x0000023EB67F6720, 16 bytes long.
 Data: <&#240;O &#182;>           > F0 4F 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000023EB67F4FF0, 40 bytes long.
 Data: < g &#182;>   &#240;[_&#184;>   > 20 67 7F B6 3E 02 00 00 F0 5B 5F B8 3E 02 00 00 
{264} normal block at 0x0000023EB67F6AE0, 16 bytes long.
 Data: <&#208;m &#182;>           > D0 6D 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x0000023EB67F6180, 16 bytes long.
 Data: <&#168;m &#182;>           > A8 6D 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000023EB67F0670, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{261} normal block at 0x0000023EB67F5EB0, 16 bytes long.
 Data: < m &#182;>           > 80 6D 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x0000023EB67F6D80, 992 bytes long.
 Data: <&#176;^ &#182;>   p  &#182;>   > B0 5E 7F B6 3E 02 00 00 70 06 7F B6 3E 02 00 00 
{96} normal block at 0x0000023EB67EFDD0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{95} normal block at 0x0000023EB67EE0C0, 16 bytes long.
 Data: < R &#182;>           > 90 52 7F B6 3E 02 00 00 00 00 00 00 00 00 00 00 
{94} normal block at 0x0000023EB67F5290, 40 bytes long.
 Data: <&#192;&#224;~&#182;>   &#208;&#253;~&#182;>   > C0 E0 7E B6 3E 02 00 00 D0 FD 7E B6 3E 02 00 00 
{73} normal block at 0x0000023EB67EDF30, 16 bytes long.
 Data: < &#234;  &#246;           > 80 EA 06 0C F6 7F 00 00 00 00 00 00 00 00 00 00 
{72} normal block at 0x0000023EB67EE6B0, 16 bytes long.
 Data: <@&#233;  &#246;           > 40 E9 06 0C F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x0000023EB67EDE90, 16 bytes long.
 Data: <&#248;W  &#246;           > F8 57 03 0C F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x0000023EB67EE070, 16 bytes long.
 Data: <&#216;W  &#246;           > D8 57 03 0C F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x0000023EB67EDA80, 16 bytes long.
 Data: <P   &#246;           > 50 04 03 0C F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x0000023EB67EE110, 16 bytes long.
 Data: <0   &#246;           > 30 04 03 0C F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x0000023EB67EDC60, 16 bytes long.
 Data: <&#224;   &#246;           > E0 02 03 0C F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000023EB67EE4D0, 16 bytes long.
 Data: <    &#246;           > 10 04 03 0C F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000023EB67EE700, 16 bytes long.
 Data: <p   &#246;           > 70 04 03 0C F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000023EB67EDC10, 16 bytes long.
 Data: < &#192;  &#246;           > 18 C0 01 0C F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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