Task 38686889

Name test_239-GPUGRID_TEST_ATM_40STEP_20261023-34-40-RND1424_0
Workunit 31628298
Created 28 Oct 2026, 4:54:37 UTC
Sent 28 Oct 2026, 4:54:42 UTC
Report deadline 2 Nov 2026, 4:54:42 UTC
Received 28 Oct 2026, 7:05:28 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 628418
Run time 39 min 39 sec
CPU time 39 min 26 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 13,171.24 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 708.07 MB
Peak swap size 9.87 GB
Peak disk usage 4.09 GB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
06:24:38 (8840): wrapper (7.9.26016): starting
06:24:38 (8840): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
06:24:39 (8840): Library/usr/bin/tar.exe exited; CPU time 0.000000
06:24:39 (8840): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'D:\BOINC_DATA\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'D:\BOINC_DATA\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
07:03:10 (8840): C:/Windows/system32/cmd.exe exited; CPU time 2366.109375
07:03:10 (8840): called boinc_finish(0)
0 bytes in 0 Free Blocks.
576 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 37084185 bytes.
Dumping objects ->
{3835248} normal block at 0x000001C7A9C5C320, 48 bytes long.
 Data: <PATH=D:\BOINC_DA> 50 41 54 48 3D 44 3A 5C 42 4F 49 4E 43 5F 44 41 
{3835237} normal block at 0x000001C7A9CF4880, 32 bytes long.
 Data: <HOME=D:\BOINC_DA> 48 4F 4D 45 3D 44 3A 5C 42 4F 49 4E 43 5F 44 41 
{3835226} normal block at 0x000001C7A9CF51E0, 32 bytes long.
 Data: <TMP=D:\BOINC_DAT> 54 4D 50 3D 44 3A 5C 42 4F 49 4E 43 5F 44 41 54 
{3835215} normal block at 0x000001C7A9CF4AC0, 32 bytes long.
 Data: <TEMP=D:\BOINC_DA> 54 45 4D 50 3D 44 3A 5C 42 4F 49 4E 43 5F 44 41 
{3835204} normal block at 0x000001C7A9CF5180, 32 bytes long.
 Data: <TMPDIR=D:\BOINC_> 54 4D 50 44 49 52 3D 44 3A 5C 42 4F 49 4E 43 5F 
{3835173} normal block at 0x000001C7A9C5C630, 48 bytes long.
 Data: <PATH=D:\BOINC_DA> 50 41 54 48 3D 44 3A 5C 42 4F 49 4E 43 5F 44 41 
{3835162} normal block at 0x000001C7A80D8A80, 200 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835159} normal block at 0x000001C7A80D7880, 8 bytes long.
 Data: <  &#164;&#169;&#199;   > 00 00 A4 A9 C7 01 00 00 
{3834561} normal block at 0x000001C7A80D9410, 200 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833961} normal block at 0x000001C7A80D7060, 8 bytes long.
 Data: < &#171; &#168;&#199;   > 00 AB 0C A8 C7 01 00 00 
..\zip\boinc_zip.cpp(122) : {312} normal block at 0x000001C7A80E1E40, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x000001C7A80D7F60, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{296} normal block at 0x000001C7A80E3C90, 16 bytes long.
 Data: <x@ &#168;&#199;           > 78 40 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x000001C7A80E3330, 16 bytes long.
 Data: <P@ &#168;&#199;           > 50 40 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x000001C7A80DBF90, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{293} normal block at 0x000001C7A80E3C40, 16 bytes long.
 Data: <(@ &#168;&#199;           > 28 40 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000001C7A80E3970, 16 bytes long.
 Data: < @ &#168;&#199;           > 00 40 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x000001C7A80E3290, 16 bytes long.
 Data: <&#216;? &#168;&#199;           > D8 3F 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000001C7A80E3920, 16 bytes long.
 Data: <&#176;? &#168;&#199;           > B0 3F 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000001C7A80DDA10, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{288} normal block at 0x000001C7A80E3830, 16 bytes long.
 Data: <&#168;&#210; &#168;&#199;           > A8 D2 0D A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000001C7A80DC050, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{286} normal block at 0x000001C7A80E35B0, 16 bytes long.
 Data: < &#210; &#168;&#199;           > 80 D2 0D A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000001C7A80E3880, 16 bytes long.
 Data: <X&#210; &#168;&#199;           > 58 D2 0D A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000001C7A80E37E0, 16 bytes long.
 Data: <0&#210; &#168;&#199;           > 30 D2 0D A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000001C7A80E30B0, 16 bytes long.
 Data: < &#210; &#168;&#199;           > 08 D2 0D A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000001C7A80E3060, 16 bytes long.
 Data: <&#224;&#209; &#168;&#199;           > E0 D1 0D A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001C7A80E38D0, 16 bytes long.
 Data: <&#184;&#209; &#168;&#199;           > B8 D1 0D A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000001C7A80DC6B0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{278} normal block at 0x000001C7A80E2F70, 16 bytes long.
 Data: < &#209; &#168;&#199;           > 90 D1 0D A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x000001C7A80DD190, 320 bytes long.
 Data: <p/ &#168;&#199;   &#176;&#198; &#168;&#199;   > 70 2F 0E A8 C7 01 00 00 B0 C6 0D A8 C7 01 00 00 
{276} normal block at 0x000001C7A80E3790, 16 bytes long.
 Data: < ? &#168;&#199;           > 90 3F 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000001C7A80E3560, 16 bytes long.
 Data: <h? &#168;&#199;           > 68 3F 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x000001C7A80DC590, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{273} normal block at 0x000001C7A80E31F0, 16 bytes long.
 Data: <@? &#168;&#199;           > 40 3F 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000001C7A80DC5F0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{271} normal block at 0x000001C7A80E3740, 16 bytes long.
 Data: < > &#168;&#199;           > 88 3E 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000001C7A80E3AB0, 16 bytes long.
 Data: <`> &#168;&#199;           > 60 3E 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000001C7A80E36A0, 16 bytes long.
 Data: <8> &#168;&#199;           > 38 3E 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000001C7A80E3BA0, 16 bytes long.
 Data: < > &#168;&#199;           > 10 3E 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000001C7A80E3B50, 16 bytes long.
 Data: <&#232;= &#168;&#199;           > E8 3D 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000001C7A80E34C0, 16 bytes long.
 Data: <&#192;= &#168;&#199;           > C0 3D 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000001C7A80E2F20, 16 bytes long.
 Data: <@&#220; &#168;&#199;           > 40 DC 0D A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x000001C7A80DDC40, 40 bytes long.
 Data: < / &#168;&#199;   0&#198;&#197;&#169;&#199;   > 20 2F 0E A8 C7 01 00 00 30 C6 C5 A9 C7 01 00 00 
{262} normal block at 0x000001C7A80E3650, 16 bytes long.
 Data: <&#160;= &#168;&#199;           > A0 3D 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000001C7A80E2ED0, 16 bytes long.
 Data: <x= &#168;&#199;           > 78 3D 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x000001C7A80DBA50, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{259} normal block at 0x000001C7A80E2E80, 16 bytes long.
 Data: <P= &#168;&#199;           > 50 3D 0E A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x000001C7A80E3D50, 992 bytes long.
 Data: < . &#168;&#199;   P&#186; &#168;&#199;   > 80 2E 0E A8 C7 01 00 00 50 BA 0D A8 C7 01 00 00 
{94} normal block at 0x000001C7A80DC290, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{93} normal block at 0x000001C7A80D6AC0, 16 bytes long.
 Data: <&#240;&#218; &#168;&#199;           > F0 DA 0D A8 C7 01 00 00 00 00 00 00 00 00 00 00 
{92} normal block at 0x000001C7A80DDAF0, 40 bytes long.
 Data: <&#192;j &#168;&#199;    &#194; &#168;&#199;   > C0 6A 0D A8 C7 01 00 00 90 C2 0D A8 C7 01 00 00 
{71} normal block at 0x000001C7A80D7830, 16 bytes long.
 Data: < &#234;#c&#247;           > 80 EA 23 63 F7 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x000001C7A80D7970, 16 bytes long.
 Data: <@&#233;#c&#247;           > 40 E9 23 63 F7 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000001C7A80D6CF0, 16 bytes long.
 Data: <&#248;W c&#247;           > F8 57 20 63 F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000001C7A80D74C0, 16 bytes long.
 Data: <&#216;W c&#247;           > D8 57 20 63 F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000001C7A80D7330, 16 bytes long.
 Data: <P  c&#247;           > 50 04 20 63 F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000001C7A80D73D0, 16 bytes long.
 Data: <0  c&#247;           > 30 04 20 63 F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000001C7A80D76A0, 16 bytes long.
 Data: <&#224;  c&#247;           > E0 02 20 63 F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000001C7A80D6BB0, 16 bytes long.
 Data: <   c&#247;           > 10 04 20 63 F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000001C7A80D6ED0, 16 bytes long.
 Data: <p  c&#247;           > 70 04 20 63 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000001C7A80D7650, 16 bytes long.
 Data: < &#192; c&#247;           > 18 C0 1E 63 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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