Task 38682344

Name test_541-GPUGRID_TEST_ATM_40STEP_20261023-19-40-RND8000_0
Workunit 31623963
Created 27 Oct 2026, 7:26:53 UTC
Sent 27 Oct 2026, 7:26:55 UTC
Report deadline 1 Nov 2026, 7:26:55 UTC
Received 27 Oct 2026, 8:12:09 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 653700
Run time 44 min 20 sec
CPU time 40 min 43 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 12,956.20 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 707.63 MB
Peak swap size 5.36 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.13</core_client_version>
<![CDATA[
<stderr_txt>
08:28:36 (25456): wrapper (7.9.26016): starting
08:28:36 (25456): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
08:28:38 (25456): Library/usr/bin/tar.exe exited; CPU time 0.000000
08:28:38 (25456): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\12\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\12\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
09:11:35 (25456): C:/Windows/system32/cmd.exe exited; CPU time 2443.328125
09:11:35 (25456): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 49811955 bytes.
Dumping objects ->
{3835277} normal block at 0x000001B6194476C0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835266} normal block at 0x000001B619447C70, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835255} normal block at 0x000001B619447C00, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835244} normal block at 0x000001B619447CE0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835233} normal block at 0x000001B6177C6F70, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835202} normal block at 0x000001B61944FCF0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835189} normal block at 0x000001B6177BC560, 8 bytes long.
 Data: <  y &#182;   > 00 00 79 17 B6 01 00 00 
{3833985} normal block at 0x000001B6177BBF20, 8 bytes long.
 Data: < &#195;N &#182;   > 10 C3 4E 19 B6 01 00 00 
..\zip\boinc_zip.cpp(122) : {324} normal block at 0x000001B6177C1500, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{309} normal block at 0x000001B6177B80E0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{308} normal block at 0x000001B6177C8460, 16 bytes long.
 Data: <8&#139;| &#182;           > 38 8B 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{307} normal block at 0x000001B6177C7D80, 16 bytes long.
 Data: < &#139;| &#182;           > 10 8B 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{306} normal block at 0x000001B6177C3B80, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{305} normal block at 0x000001B6177C7D30, 16 bytes long.
 Data: <&#232;&#138;| &#182;           > E8 8A 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{304} normal block at 0x000001B6177C7E20, 16 bytes long.
 Data: <&#192;&#138;| &#182;           > C0 8A 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{303} normal block at 0x000001B6177C81E0, 16 bytes long.
 Data: < &#138;| &#182;           > 98 8A 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{302} normal block at 0x000001B6177C7CE0, 16 bytes long.
 Data: <p&#138;| &#182;           > 70 8A 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{301} normal block at 0x000001B6177C7130, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{300} normal block at 0x000001B6177C8140, 16 bytes long.
 Data: <( { &#182;           > 28 07 7B 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{299} normal block at 0x000001B6177C3C40, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{298} normal block at 0x000001B6177C8550, 16 bytes long.
 Data: <  { &#182;           > 00 07 7B 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x000001B6177C7C40, 16 bytes long.
 Data: <&#216; { &#182;           > D8 06 7B 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x000001B6177C7920, 16 bytes long.
 Data: <&#176; { &#182;           > B0 06 7B 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x000001B6177C7F10, 16 bytes long.
 Data: <  { &#182;           > 88 06 7B 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000001B6177C82D0, 16 bytes long.
 Data: <` { &#182;           > 60 06 7B 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000001B6177C7DD0, 16 bytes long.
 Data: <8 { &#182;           > 38 06 7B 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x000001B6177C3CA0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{290} normal block at 0x000001B6177C83C0, 16 bytes long.
 Data: <  { &#182;           > 10 06 7B 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000001B6177B0610, 320 bytes long.
 Data: <&#192;&#131;| &#182;   &#160;<| &#182;   > C0 83 7C 17 B6 01 00 00 A0 3C 7C 17 B6 01 00 00 
{288} normal block at 0x000001B6177C80A0, 16 bytes long.
 Data: <P&#138;| &#182;           > 50 8A 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000001B6177C8000, 16 bytes long.
 Data: <(&#138;| &#182;           > 28 8A 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000001B6177C3FA0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{285} normal block at 0x000001B6177C7AB0, 16 bytes long.
 Data: < &#138;| &#182;           > 00 8A 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000001B6177C4300, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{283} normal block at 0x000001B6177C7C90, 16 bytes long.
 Data: <H&#137;| &#182;           > 48 89 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000001B6177C7BF0, 16 bytes long.
 Data: < &#137;| &#182;           > 20 89 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000001B6177C7970, 16 bytes long.
 Data: <&#248; | &#182;           > F8 88 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001B6177C7BA0, 16 bytes long.
 Data: <&#208; | &#182;           > D0 88 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000001B6177C78D0, 16 bytes long.
 Data: <&#168; | &#182;           > A8 88 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000001B6177C8410, 16 bytes long.
 Data: <  | &#182;           > 80 88 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000001B6177C76F0, 16 bytes long.
 Data: <&#208;s| &#182;           > D0 73 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000001B6177C73D0, 40 bytes long.
 Data: <&#240;v| &#182;   &#240;&#252;D &#182;   > F0 76 7C 17 B6 01 00 00 F0 FC 44 19 B6 01 00 00 
{274} normal block at 0x000001B6177C8280, 16 bytes long.
 Data: <` | &#182;           > 60 88 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000001B6177C8320, 16 bytes long.
 Data: <8 | &#182;           > 38 88 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000001B6177C4060, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{271} normal block at 0x000001B6177C77E0, 16 bytes long.
 Data: <  | &#182;           > 10 88 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000001B6177C8810, 992 bytes long.
 Data: <&#224;w| &#182;   `@| &#182;   > E0 77 7C 17 B6 01 00 00 60 40 7C 17 B6 01 00 00 
{106} normal block at 0x000001B6177C3F40, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{105} normal block at 0x000001B6177BC240, 16 bytes long.
 Data: <`s| &#182;           > 60 73 7C 17 B6 01 00 00 00 00 00 00 00 00 00 00 
{104} normal block at 0x000001B6177C7360, 40 bytes long.
 Data: <@&#194;{ &#182;   @?| &#182;   > 40 C2 7B 17 B6 01 00 00 40 3F 7C 17 B6 01 00 00 
{83} normal block at 0x000001B6177BC880, 16 bytes long.
 Data: < &#234;D&#147;&#247;           > 80 EA 44 93 F7 7F 00 00 00 00 00 00 00 00 00 00 
{82} normal block at 0x000001B6177BCC40, 16 bytes long.
 Data: <@&#233;D&#147;&#247;           > 40 E9 44 93 F7 7F 00 00 00 00 00 00 00 00 00 00 
{81} normal block at 0x000001B6177BC380, 16 bytes long.
 Data: <&#248;WA&#147;&#247;           > F8 57 41 93 F7 7F 00 00 00 00 00 00 00 00 00 00 
{80} normal block at 0x000001B6177BC3D0, 16 bytes long.
 Data: <&#216;WA&#147;&#247;           > D8 57 41 93 F7 7F 00 00 00 00 00 00 00 00 00 00 
{79} normal block at 0x000001B6177BC740, 16 bytes long.
 Data: <P A&#147;&#247;           > 50 04 41 93 F7 7F 00 00 00 00 00 00 00 00 00 00 
{78} normal block at 0x000001B6177BC2E0, 16 bytes long.
 Data: <0 A&#147;&#247;           > 30 04 41 93 F7 7F 00 00 00 00 00 00 00 00 00 00 
{77} normal block at 0x000001B6177BCD80, 16 bytes long.
 Data: <&#224; A&#147;&#247;           > E0 02 41 93 F7 7F 00 00 00 00 00 00 00 00 00 00 
{76} normal block at 0x000001B6177BC0B0, 16 bytes long.
 Data: <  A&#147;&#247;           > 10 04 41 93 F7 7F 00 00 00 00 00 00 00 00 00 00 
{75} normal block at 0x000001B6177BC7E0, 16 bytes long.
 Data: <p A&#147;&#247;           > 70 04 41 93 F7 7F 00 00 00 00 00 00 00 00 00 00 
{74} normal block at 0x000001B6177BCC90, 16 bytes long.
 Data: < &#192;?&#147;&#247;           > 18 C0 3F 93 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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