Task 38681852

Name test_304-GPUGRID_TEST_ATM_40STEP_20261023-39-40-RND4977_0
Workunit 31623497
Created 27 Oct 2026, 5:37:41 UTC
Sent 27 Oct 2026, 5:37:44 UTC
Report deadline 1 Nov 2026, 5:37:44 UTC
Received 27 Oct 2026, 8:52:49 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 618719
Run time 2 hours 3 min 23 sec
CPU time 1 hours 55 min 5 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 4,538.31 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 670.71 MB
Peak swap size 2.21 GB
Peak disk usage 3.46 GB

Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
07:53:46 (5200): wrapper (7.9.26016): starting
07:53:46 (5200): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
07:53:49 (5200): Library/usr/bin/tar.exe exited; CPU time 0.000000
07:53:49 (5200): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
09:51:24 (5200): C:/Windows/system32/cmd.exe exited; CPU time 6905.046875
09:51:24 (5200): called boinc_finish(0)
0 bytes in 0 Free Blocks.
546 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 73780907 bytes.
Dumping objects ->
{3835251} normal block at 0x000002B4445F19F0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835240} normal block at 0x000002B4445F16E0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835229} normal block at 0x000002B4445F1670, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835218} normal block at 0x000002B4445F1EC0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835207} normal block at 0x000002B4445F1980, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835176} normal block at 0x000002B44470B020, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835165} normal block at 0x000002B4447F24A0, 145 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835162} normal block at 0x000002B442B60360, 8 bytes long.
 Data: <  `D&#180;   > 00 00 60 44 B4 02 00 00 
{3834548} normal block at 0x000002B4447F2710, 145 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833945} normal block at 0x000002B442B60540, 8 bytes long.
 Data: <ptvD&#180;   > 70 74 76 44 B4 02 00 00 
..\zip\boinc_zip.cpp(122) : {304} normal block at 0x000002B442B60850, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000002B442B45CB0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{288} normal block at 0x000002B442B56A80, 16 bytes long.
 Data: <&#184; &#182;B&#180;           > B8 1F B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000002B442B56580, 16 bytes long.
 Data: <  &#182;B&#180;           > 90 1F B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000002B442B5C320, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{285} normal block at 0x000002B442B56760, 16 bytes long.
 Data: <h &#182;B&#180;           > 68 1F B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000002B442B56530, 16 bytes long.
 Data: <@ &#182;B&#180;           > 40 1F B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000002B442B56990, 16 bytes long.
 Data: <  &#182;B&#180;           > 18 1F B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000002B442B55D60, 16 bytes long.
 Data: <&#240; &#182;B&#180;           > F0 1E B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000002B442B5ABC0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{280} normal block at 0x000002B442B56490, 16 bytes long.
 Data: <H\&#180;B&#180;           > 48 5C B4 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000002B442B5CD40, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{278} normal block at 0x000002B442B568A0, 16 bytes long.
 Data: < \&#180;B&#180;           > 20 5C B4 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000002B442B56350, 16 bytes long.
 Data: <&#248;[&#180;B&#180;           > F8 5B B4 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000002B442B569E0, 16 bytes long.
 Data: <&#208;[&#180;B&#180;           > D0 5B B4 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x000002B442B56710, 16 bytes long.
 Data: <&#168;[&#180;B&#180;           > A8 5B B4 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000002B442B606D0, 16 bytes long.
 Data: < [&#180;B&#180;           > 80 5B B4 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000002B442B60680, 16 bytes long.
 Data: <X[&#180;B&#180;           > 58 5B B4 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000002B442B5BF60, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{270} normal block at 0x000002B442B604F0, 16 bytes long.
 Data: <0[&#180;B&#180;           > 30 5B B4 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000002B442B45B30, 320 bytes long.
 Data: <&#240; &#182;B&#180;   `&#191;&#181;B&#180;   > F0 04 B6 42 B4 02 00 00 60 BF B5 42 B4 02 00 00 
{268} normal block at 0x000002B442B60090, 16 bytes long.
 Data: <&#208; &#182;B&#180;           > D0 1E B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000002B442B607C0, 16 bytes long.
 Data: <&#168; &#182;B&#180;           > A8 1E B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000002B442B5C3E0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{265} normal block at 0x000002B442B604A0, 16 bytes long.
 Data: <  &#182;B&#180;           > 80 1E B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000002B442B5CC80, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{263} normal block at 0x000002B442B60450, 16 bytes long.
 Data: <&#200; &#182;B&#180;           > C8 1D B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000002B442B60590, 16 bytes long.
 Data: <&#160; &#182;B&#180;           > A0 1D B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000002B442B603B0, 16 bytes long.
 Data: <x &#182;B&#180;           > 78 1D B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x000002B442B60630, 16 bytes long.
 Data: <P &#182;B&#180;           > 50 1D B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000002B442B605E0, 16 bytes long.
 Data: <( &#182;B&#180;           > 28 1D B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x000002B442B60310, 16 bytes long.
 Data: <  &#182;B&#180;           > 00 1D B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x000002B442B60770, 16 bytes long.
 Data: <`&#174;&#181;B&#180;           > 60 AE B5 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{255} normal block at 0x000002B442B5AE60, 40 bytes long.
 Data: <p &#182;B&#180;    &#176;pD&#180;   > 70 07 B6 42 B4 02 00 00 20 B0 70 44 B4 02 00 00 
{254} normal block at 0x000002B442B60220, 16 bytes long.
 Data: <&#224; &#182;B&#180;           > E0 1C B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{253} normal block at 0x000002B442B601D0, 16 bytes long.
 Data: <&#184; &#182;B&#180;           > B8 1C B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{252} normal block at 0x000002B442B5C1A0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{251} normal block at 0x000002B442B60400, 16 bytes long.
 Data: <  &#182;B&#180;           > 90 1C B6 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{250} normal block at 0x000002B442B61C90, 992 bytes long.
 Data: <  &#182;B&#180;   &#160;&#193;&#181;B&#180;   > 00 04 B6 42 B4 02 00 00 A0 C1 B5 42 B4 02 00 00 
{86} normal block at 0x000002B442B5C4A0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{85} normal block at 0x000002B442B56080, 16 bytes long.
 Data: < &#176;&#181;B&#180;           > 90 B0 B5 42 B4 02 00 00 00 00 00 00 00 00 00 00 
{84} normal block at 0x000002B442B5B090, 40 bytes long.
 Data: < `&#181;B&#180;   &#160;&#196;&#181;B&#180;   > 80 60 B5 42 B4 02 00 00 A0 C4 B5 42 B4 02 00 00 
{63} normal block at 0x000002B442B563A0, 16 bytes long.
 Data: < &#234;&#154;&#165;&#246;           > 80 EA 9A A5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000002B442B566C0, 16 bytes long.
 Data: <@&#233;&#154;&#165;&#246;           > 40 E9 9A A5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000002B442B55FE0, 16 bytes long.
 Data: <&#248;W&#151;&#165;&#246;           > F8 57 97 A5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x000002B442B567B0, 16 bytes long.
 Data: <&#216;W&#151;&#165;&#246;           > D8 57 97 A5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x000002B442B564E0, 16 bytes long.
 Data: <P &#151;&#165;&#246;           > 50 04 97 A5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x000002B442B56170, 16 bytes long.
 Data: <0 &#151;&#165;&#246;           > 30 04 97 A5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{57} normal block at 0x000002B442B55F90, 16 bytes long.
 Data: <&#224; &#151;&#165;&#246;           > E0 02 97 A5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{56} normal block at 0x000002B442B56620, 16 bytes long.
 Data: <  &#151;&#165;&#246;           > 10 04 97 A5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{55} normal block at 0x000002B442B55C70, 16 bytes long.
 Data: <p &#151;&#165;&#246;           > 70 04 97 A5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{54} normal block at 0x000002B442B55E50, 16 bytes long.
 Data: < &#192;&#149;&#165;&#246;           > 18 C0 95 A5 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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