Task 38680232

Name test_357-GPUGRID_TEST_ATM_40STEP_20261023-22-40-RND3219_0
Workunit 31621963
Created 26 Oct 2026, 23:15:27 UTC
Sent 26 Oct 2026, 23:15:32 UTC
Report deadline 31 Oct 2026, 23:15:32 UTC
Received 27 Oct 2026, 0:49:30 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 651831
Run time 32 min 11 sec
CPU time 27 min 58 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 19,472.42 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 768.45 MB
Peak swap size 12.94 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
20:17:42 (16020): wrapper (7.9.26016): starting
20:17:42 (16020): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
20:17:44 (16020): Library/usr/bin/tar.exe exited; CPU time 0.015625
20:17:44 (16020): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\30\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\30\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
20:48:41 (16020): C:/Windows/system32/cmd.exe exited; CPU time 1678.687500
20:48:41 (16020): called boinc_finish(0)
0 bytes in 0 Free Blocks.
536 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 32227929 bytes.
Dumping objects ->
{3835536} normal block at 0x0000023DB57FCF20, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835525} normal block at 0x0000023DB39B4A80, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835514} normal block at 0x0000023DB39B4F50, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835503} normal block at 0x0000023DB39B4CB0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835492} normal block at 0x0000023DB39B4EE0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835461} normal block at 0x0000023DB5847540, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835450} normal block at 0x0000023DB3A1A8F0, 140 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835447} normal block at 0x0000023DB39AF180, 8 bytes long.
 Data: <  &#239;&#179;=   > 00 00 EF B3 3D 02 00 00 
{3834695} normal block at 0x0000023DB3A1A410, 140 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833963} normal block at 0x0000023DB39AF4F0, 8 bytes long.
 Data: <`S &#181;=   > 60 53 8D B5 3D 02 00 00 
..\zip\boinc_zip.cpp(122) : {313} normal block at 0x0000023DB39B0CF0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x0000023DB39A6C60, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{297} normal block at 0x0000023DB39B5D20, 16 bytes long.
 Data: <Hg&#155;&#179;=           > 48 67 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x0000023DB39B63B0, 16 bytes long.
 Data: < g&#155;&#179;=           > 20 67 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x0000023DB39B0040, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{294} normal block at 0x0000023DB39B6360, 16 bytes long.
 Data: <&#248;f&#155;&#179;=           > F8 66 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x0000023DB39B62C0, 16 bytes long.
 Data: <&#208;f&#155;&#179;=           > D0 66 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000023DB39B6270, 16 bytes long.
 Data: <&#168;f&#155;&#179;=           > A8 66 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000023DB39B5C80, 16 bytes long.
 Data: < f&#155;&#179;=           > 80 66 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000023DB39B4B60, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{289} normal block at 0x0000023DB39B5EB0, 16 bytes long.
 Data: <&#168;&#231;&#154;&#179;=           > A8 E7 9A B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x0000023DB39AFA40, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{287} normal block at 0x0000023DB39B5CD0, 16 bytes long.
 Data: < &#231;&#154;&#179;=           > 80 E7 9A B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000023DB39B58C0, 16 bytes long.
 Data: <X&#231;&#154;&#179;=           > 58 E7 9A B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000023DB39B6310, 16 bytes long.
 Data: <0&#231;&#154;&#179;=           > 30 E7 9A B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000023DB39B5460, 16 bytes long.
 Data: < &#231;&#154;&#179;=           > 08 E7 9A B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000023DB39B6220, 16 bytes long.
 Data: <&#224;&#230;&#154;&#179;=           > E0 E6 9A B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000023DB39B59B0, 16 bytes long.
 Data: <&#184;&#230;&#154;&#179;=           > B8 E6 9A B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000023DB39B06A0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{279} normal block at 0x0000023DB39B56E0, 16 bytes long.
 Data: < &#230;&#154;&#179;=           > 90 E6 9A B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000023DB39AE690, 320 bytes long.
 Data: <&#224;V&#155;&#179;=   &#160; &#155;&#179;=   > E0 56 9B B3 3D 02 00 00 A0 06 9B B3 3D 02 00 00 
{277} normal block at 0x0000023DB39B5BE0, 16 bytes long.
 Data: <`f&#155;&#179;=           > 60 66 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000023DB39B6180, 16 bytes long.
 Data: <8f&#155;&#179;=           > 38 66 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000023DB39AFF80, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{274} normal block at 0x0000023DB39B61D0, 16 bytes long.
 Data: < f&#155;&#179;=           > 10 66 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x0000023DB39AFD40, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{272} normal block at 0x0000023DB39B60E0, 16 bytes long.
 Data: <Xe&#155;&#179;=           > 58 65 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x0000023DB39B5F00, 16 bytes long.
 Data: <0e&#155;&#179;=           > 30 65 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000023DB39B5640, 16 bytes long.
 Data: < e&#155;&#179;=           > 08 65 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x0000023DB39B6090, 16 bytes long.
 Data: <&#224;d&#155;&#179;=           > E0 64 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000023DB39B5960, 16 bytes long.
 Data: <&#184;d&#155;&#179;=           > B8 64 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000023DB39B5AA0, 16 bytes long.
 Data: < d&#155;&#179;=           > 90 64 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000023DB39B5E10, 16 bytes long.
 Data: <@L&#155;&#179;=           > 40 4C 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000023DB39B4C40, 40 bytes long.
 Data: < ^&#155;&#179;=   @u&#132;&#181;=   > 10 5E 9B B3 3D 02 00 00 40 75 84 B5 3D 02 00 00 
{263} normal block at 0x0000023DB39B5FA0, 16 bytes long.
 Data: <pd&#155;&#179;=           > 70 64 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000023DB39B5C30, 16 bytes long.
 Data: <Hd&#155;&#179;=           > 48 64 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x0000023DB39B01C0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{260} normal block at 0x0000023DB39B55F0, 16 bytes long.
 Data: < d&#155;&#179;=           > 20 64 9B B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x0000023DB39B6420, 992 bytes long.
 Data: <&#240;U&#155;&#179;=   &#192; &#155;&#179;=   > F0 55 9B B3 3D 02 00 00 C0 01 9B B3 3D 02 00 00 
{95} normal block at 0x0000023DB39B0640, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{94} normal block at 0x0000023DB39AF0E0, 16 bytes long.
 Data: <@&#212; &#179;=           > 40 D4 99 B3 3D 02 00 00 00 00 00 00 00 00 00 00 
{93} normal block at 0x0000023DB399D440, 40 bytes long.
 Data: <&#224;&#240;&#154;&#179;=   @ &#155;&#179;=   > E0 F0 9A B3 3D 02 00 00 40 06 9B B3 3D 02 00 00 
{72} normal block at 0x0000023DB39AF3B0, 16 bytes long.
 Data: < &#234;&#215;&#243;&#246;           > 80 EA D7 F3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x0000023DB39AF810, 16 bytes long.
 Data: <@&#233;&#215;&#243;&#246;           > 40 E9 D7 F3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x0000023DB39AF360, 16 bytes long.
 Data: <&#248;W&#212;&#243;&#246;           > F8 57 D4 F3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x0000023DB39AF310, 16 bytes long.
 Data: <&#216;W&#212;&#243;&#246;           > D8 57 D4 F3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x0000023DB39AF4A0, 16 bytes long.
 Data: <P &#212;&#243;&#246;           > 50 04 D4 F3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x0000023DB39AEEB0, 16 bytes long.
 Data: <0 &#212;&#243;&#246;           > 30 04 D4 F3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000023DB39AF2C0, 16 bytes long.
 Data: <&#224; &#212;&#243;&#246;           > E0 02 D4 F3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000023DB39AF220, 16 bytes long.
 Data: <  &#212;&#243;&#246;           > 10 04 D4 F3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000023DB39AEC80, 16 bytes long.
 Data: <p &#212;&#243;&#246;           > 70 04 D4 F3 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000023DB39AF270, 16 bytes long.
 Data: < &#192;&#210;&#243;&#246;           > 18 C0 D2 F3 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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