Task 38679091

Name test_374-GPUGRID_TEST_ATM_40STEP_20261023-22-40-RND6800_1
Workunit 31620507
Created 26 Oct 2026, 19:26:36 UTC
Sent 26 Oct 2026, 19:26:39 UTC
Report deadline 31 Oct 2026, 19:26:39 UTC
Received 26 Oct 2026, 21:39:17 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 651032
Run time 1 hours 29 min 59 sec
CPU time 1 hours 16 min 55 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 2,503.42 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 705.48 MB
Peak swap size 6.72 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
20:31:26 (22800): wrapper (7.9.26016): starting
20:31:26 (22800): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
20:31:29 (22800): Library/usr/bin/tar.exe exited; CPU time 0.015625
20:31:29 (22800): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'D:\BOINC\slots\16\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'D:\BOINC\slots\16\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {3835449} normal block at 0x000001F92F80E980, 8 bytes long.
 Data: <   /    > 00 00 CF 2F F9 01 00 00 
..\lib\diagnostics_win.cpp(417) : {3833970} normal block at 0x000001F9316174B0, 1080 bytes long.
 Data: <@               > 40 96 00 00 CD CD CD CD 84 01 00 00 00 00 00 00 
..\zip\boinc_zip.cpp(122) : {317} normal block at 0x000001F92F80FA30, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
Object dump complete.
22:05:09 (30288): wrapper (7.9.26016): starting
22:05:09 (30288): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
Ya existe el subdirectorio o el archivo D:\BOINC\slots\16\tmp.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
22:38:47 (30288): C:/Windows/system32/cmd.exe exited; CPU time 1805.515625
22:38:47 (30288): called boinc_finish(0)
0 bytes in 0 Free Blocks.
456 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 49393101 bytes.
Dumping objects ->
{1878} normal block at 0x00000277C4C877C0, 48 bytes long.
 Data: <PATH=D:\BOINC\sl> 50 41 54 48 3D 44 3A 5C 42 4F 49 4E 43 5C 73 6C 
{1867} normal block at 0x00000277C4C80F80, 32 bytes long.
 Data: <HOME=D:\BOINC\sl> 48 4F 4D 45 3D 44 3A 5C 42 4F 49 4E 43 5C 73 6C 
{1856} normal block at 0x00000277C4C81B80, 32 bytes long.
 Data: <TMP=D:\BOINC\slo> 54 4D 50 3D 44 3A 5C 42 4F 49 4E 43 5C 73 6C 6F 
{1845} normal block at 0x00000277C4C80E00, 32 bytes long.
 Data: <TEMP=D:\BOINC\sl> 54 45 4D 50 3D 44 3A 5C 42 4F 49 4E 43 5C 73 6C 
{1834} normal block at 0x00000277C4C81280, 32 bytes long.
 Data: <TMPDIR=D:\BOINC\> 54 4D 50 44 49 52 3D 44 3A 5C 42 4F 49 4E 43 5C 
{1803} normal block at 0x00000277C4C87750, 48 bytes long.
 Data: <PATH=D:\BOINC\sl> 50 41 54 48 3D 44 3A 5C 42 4F 49 4E 43 5C 73 6C 
{1792} normal block at 0x00000277C4C80710, 140 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {1789} normal block at 0x00000277C4C86750, 8 bytes long.
 Data: <  [ w   > 00 00 5B C6 77 02 00 00 
{1046} normal block at 0x00000277C4C6D150, 140 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{311} normal block at 0x00000277C4C86340, 8 bytes long.
 Data: < ~  w   > A0 7E C8 C4 77 02 00 00 
{302} normal block at 0x00000277C4C770F0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{301} normal block at 0x00000277C4C86520, 16 bytes long.
 Data: < u  w           > 98 75 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{300} normal block at 0x00000277C4C86700, 16 bytes long.
 Data: <pu  w           > 70 75 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{299} normal block at 0x00000277C4C80FE0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{298} normal block at 0x00000277C4C85EE0, 16 bytes long.
 Data: <Hu  w           > 48 75 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x00000277C4C86430, 16 bytes long.
 Data: < u  w           > 20 75 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x00000277C4C86C50, 16 bytes long.
 Data: < t  w           > F8 74 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x00000277C4C869D0, 16 bytes long.
 Data: < t  w           > D0 74 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x00000277C4C876E0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{293} normal block at 0x00000277C4C861B0, 16 bytes long.
 Data: <    w           > A8 FD C6 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x00000277C4C815E0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{291} normal block at 0x00000277C4C86C00, 16 bytes long.
 Data: <    w           > 80 FD C6 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x00000277C4C86BB0, 16 bytes long.
 Data: <X   w           > 58 FD C6 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x00000277C4C86020, 16 bytes long.
 Data: <0   w           > 30 FD C6 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x00000277C4C85E90, 16 bytes long.
 Data: <    w           > 08 FD C6 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x00000277C4C86660, 16 bytes long.
 Data: <    w           > E0 FC C6 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x00000277C4C85DF0, 16 bytes long.
 Data: <    w           > B8 FC C6 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x00000277C4C81760, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{283} normal block at 0x00000277C4C85E40, 16 bytes long.
 Data: <    w           > 90 FC C6 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x00000277C4C6FC90, 320 bytes long.
 Data: <@^  w   `   w   > 40 5E C8 C4 77 02 00 00 60 17 C8 C4 77 02 00 00 
{281} normal block at 0x00000277C4C864D0, 16 bytes long.
 Data: < t  w           > B0 74 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x00000277C4C86B10, 16 bytes long.
 Data: < t  w           > 88 74 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x00000277C4C81BE0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{278} normal block at 0x00000277C4C85FD0, 16 bytes long.
 Data: <`t  w           > 60 74 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x00000277C4C81A60, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{276} normal block at 0x00000277C4C86B60, 16 bytes long.
 Data: < s  w           > A8 73 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x00000277C4C86980, 16 bytes long.
 Data: < s  w           > 80 73 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x00000277C4C863E0, 16 bytes long.
 Data: <Xs  w           > 58 73 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x00000277C4C85DA0, 16 bytes long.
 Data: <0s  w           > 30 73 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x00000277C4C86A70, 16 bytes long.
 Data: < s  w           > 08 73 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x00000277C4C85D50, 16 bytes long.
 Data: < r  w           > E0 72 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x00000277C4C862F0, 16 bytes long.
 Data: <    w           > E0 07 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x00000277C4C807E0, 40 bytes long.
 Data: < b  w   Pw  w   > F0 62 C8 C4 77 02 00 00 50 77 C8 C4 77 02 00 00 
{267} normal block at 0x00000277C4C86A20, 16 bytes long.
 Data: < r  w           > C0 72 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x00000277C4C85D00, 16 bytes long.
 Data: < r  w           > 98 72 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x00000277C4C81160, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{264} normal block at 0x00000277C4C85F80, 16 bytes long.
 Data: <pr  w           > 70 72 C8 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x00000277C4C87270, 992 bytes long.
 Data: < _  w   `   w   > 80 5F C8 C4 77 02 00 00 60 11 C8 C4 77 02 00 00 
{99} normal block at 0x00000277C4C81CA0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{98} normal block at 0x00000277C4C7EA20, 16 bytes long.
 Data: <P   w           > 50 98 C6 C4 77 02 00 00 00 00 00 00 00 00 00 00 
{97} normal block at 0x00000277C4C69850, 40 bytes long.
 Data: <    w       w   > 20 EA C7 C4 77 02 00 00 A0 1C C8 C4 77 02 00 00 
{76} normal block at 0x00000277C4C7E3E0, 16 bytes long.
 Data: <  b             > 80 EA 62 B9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{75} normal block at 0x00000277C4C7E390, 16 bytes long.
 Data: <@ b             > 40 E9 62 B9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{74} normal block at 0x00000277C4C7E2A0, 16 bytes long.
 Data: < W_             > F8 57 5F B9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{73} normal block at 0x00000277C4C7EC00, 16 bytes long.
 Data: < W_             > D8 57 5F B9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{72} normal block at 0x00000277C4C7E980, 16 bytes long.
 Data: <P _             > 50 04 5F B9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x00000277C4C7E5C0, 16 bytes long.
 Data: <0 _             > 30 04 5F B9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x00000277C4C7E7F0, 16 bytes long.
 Data: <  _             > E0 02 5F B9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x00000277C4C7EDE0, 16 bytes long.
 Data: <  _             > 10 04 5F B9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x00000277C4C7E2F0, 16 bytes long.
 Data: <p _             > 70 04 5F B9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x00000277C4C7E930, 16 bytes long.
 Data: <  ]             > 18 C0 5D B9 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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