Task 38678927

Name test_61-GPUGRID_TEST_ATM_40STEP_20261023-35-40-RND2879_0
Workunit 31620730
Created 26 Oct 2026, 18:55:36 UTC
Sent 26 Oct 2026, 18:55:42 UTC
Report deadline 31 Oct 2026, 18:55:42 UTC
Received 26 Oct 2026, 20:26:20 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 648712
Run time 45 min 1 sec
CPU time 45 min 1 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 6,710.17 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 644.66 MB
Peak swap size 6.75 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
03:41:11 (33464): wrapper (7.9.26016): starting
03:41:11 (33464): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
03:41:12 (33464): Library/usr/bin/tar.exe exited; CPU time 0.000000
03:41:12 (33464): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
04:25:21 (33464): C:/Windows/system32/cmd.exe exited; CPU time 2701.156250
04:25:21 (33464): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 42446233 bytes.
Dumping objects ->
{3835255} normal block at 0x00000291406CC500, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835244} normal block at 0x00000291406CC110, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835233} normal block at 0x00000291406CB9A0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835222} normal block at 0x00000291406CC490, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835211} normal block at 0x00000291406CC180, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835180} normal block at 0x0000029143F41390, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835167} normal block at 0x00000291406C93A0, 8 bytes long.
 Data: <   B    > 00 00 16 42 91 02 00 00 
{3834025} normal block at 0x00000291406C8E50, 8 bytes long.
 Data: <   C    > D0 D4 F9 43 91 02 00 00 
..\zip\boinc_zip.cpp(122) : {304} normal block at 0x00000291406C7430, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x00000291406AB9A0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{288} normal block at 0x00000291406C9710, 16 bytes long.
 Data: <  l@            > 08 88 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x00000291406C9300, 16 bytes long.
 Data: <  l@            > E0 87 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x00000291406C3250, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{285} normal block at 0x00000291406C8F90, 16 bytes long.
 Data: <  l@            > B8 87 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x00000291406C9080, 16 bytes long.
 Data: <  l@            > 90 87 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x00000291406C9490, 16 bytes long.
 Data: <h l@            > 68 87 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x00000291406C9120, 16 bytes long.
 Data: <@ l@            > 40 87 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x00000291406C1450, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{280} normal block at 0x00000291406C9760, 16 bytes long.
 Data: < !l@            > 88 21 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x00000291406C24D0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{278} normal block at 0x00000291406C4F50, 16 bytes long.
 Data: <`!l@            > 60 21 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x00000291406C4BE0, 16 bytes long.
 Data: <8!l@            > 38 21 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x00000291406C4AA0, 16 bytes long.
 Data: < !l@            > 10 21 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x00000291406C4A00, 16 bytes long.
 Data: <  l@            > E8 20 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x00000291406C4960, 16 bytes long.
 Data: <  l@            > C0 20 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x00000291406C4820, 16 bytes long.
 Data: <  l@            > 98 20 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x00000291406C2AD0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{270} normal block at 0x00000291406C47D0, 16 bytes long.
 Data: <p l@            > 70 20 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x00000291406C2070, 320 bytes long.
 Data: < Gl@     *l@    > D0 47 6C 40 91 02 00 00 D0 2A 6C 40 91 02 00 00 
{268} normal block at 0x00000291406C4F00, 16 bytes long.
 Data: <  l@            > 20 87 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x00000291406C4780, 16 bytes long.
 Data: <  l@            > F8 86 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x00000291406C3130, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{265} normal block at 0x00000291406C4640, 16 bytes long.
 Data: <  l@            > D0 86 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x00000291406C31F0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{263} normal block at 0x00000291406C4C30, 16 bytes long.
 Data: <  l@            > 18 86 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x00000291406C4A50, 16 bytes long.
 Data: <  l@            > F0 85 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x00000291406C45F0, 16 bytes long.
 Data: <  l@            > C8 85 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x00000291406C49B0, 16 bytes long.
 Data: <  l@            > A0 85 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x00000291406C5090, 16 bytes long.
 Data: <x l@            > 78 85 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x00000291406C4FF0, 16 bytes long.
 Data: <P l@            > 50 85 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x00000291406C53B0, 16 bytes long.
 Data: <  l@            > 20 12 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{255} normal block at 0x00000291406C1220, 40 bytes long.
 Data: < Sl@       C    > B0 53 6C 40 91 02 00 00 90 13 F4 43 91 02 00 00 
{254} normal block at 0x00000291406C4FA0, 16 bytes long.
 Data: <0 l@            > 30 85 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{253} normal block at 0x00000291406C4EB0, 16 bytes long.
 Data: <  l@            > 08 85 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{252} normal block at 0x00000291406C2530, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{251} normal block at 0x00000291406C45A0, 16 bytes long.
 Data: <  l@            > E0 84 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{250} normal block at 0x00000291406C84E0, 992 bytes long.
 Data: < El@    0%l@    > A0 45 6C 40 91 02 00 00 30 25 6C 40 91 02 00 00 
{86} normal block at 0x00000291406C27D0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{85} normal block at 0x00000291406C52C0, 16 bytes long.
 Data: <  l@            > 80 16 6C 40 91 02 00 00 00 00 00 00 00 00 00 00 
{84} normal block at 0x00000291406C1680, 40 bytes long.
 Data: < Rl@     'l@    > C0 52 6C 40 91 02 00 00 D0 27 6C 40 91 02 00 00 
{61} normal block at 0x00000291406C4E60, 16 bytes long.
 Data: <  4             > 80 EA 34 A9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x00000291406C5180, 16 bytes long.
 Data: <@ 4             > 40 E9 34 A9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x00000291406C4DC0, 16 bytes long.
 Data: < W1             > F8 57 31 A9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x00000291406C4D70, 16 bytes long.
 Data: < W1             > D8 57 31 A9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{57} normal block at 0x00000291406C4D20, 16 bytes long.
 Data: <P 1             > 50 04 31 A9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{56} normal block at 0x00000291406C5220, 16 bytes long.
 Data: <0 1             > 30 04 31 A9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{55} normal block at 0x00000291406C44B0, 16 bytes long.
 Data: <  1             > E0 02 31 A9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{54} normal block at 0x00000291406C4C80, 16 bytes long.
 Data: <  1             > 10 04 31 A9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{53} normal block at 0x00000291406C4CD0, 16 bytes long.
 Data: <p 1             > 70 04 31 A9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{52} normal block at 0x00000291406C4E10, 16 bytes long.
 Data: <  /             > 18 C0 2F A9 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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