Task 38677958

Stderr output

<core_client_version>8.2.15</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
2026-10-26 17:16:44 (318396): wrapper (8.1.26018): starting
2026-10-26 17:16:57 (318396): wrapper: running bin/python (bin/conda-unpack)
2026-10-26 17:16:57 (318396): wrapper: created child process 318398
2026-10-26 17:16:58 (318396): bin/python exited; CPU time 0.054535
2026-10-26 17:16:58 (318396): wrapper: running bin/tar (xjvf input.tar.bz2)
2026-10-26 17:16:58 (318396): wrapper: created child process 318399
2026-10-26 17:16:59 (318396): bin/tar exited; CPU time 0.420079
2026-10-26 17:16:59 (318396): wrapper: running bin/bash (run.sh)
2026-10-26 17:16:59 (318396): wrapper: created child process 318419
+ echo 'Setup environment'
+ source bin/activate
++ _conda_pack_activate
++ local _CONDA_SHELL_FLAVOR
++ '[' -n x ']'
++ _CONDA_SHELL_FLAVOR=bash
++ local script_dir
++ case "$_CONDA_SHELL_FLAVOR" in
+++ dirname bin/activate
++ script_dir=bin
+++ cd bin
+++ pwd
++ local full_path_script_dir=/var/lib/boinc/slots/0/bin
+++ dirname /var/lib/boinc/slots/0/bin
++ local full_path_env=/var/lib/boinc/slots/0
+++ basename /var/lib/boinc/slots/0
++ local env_name=0
++ '[' -n '' ']'
++ export CONDA_PREFIX=/var/lib/boinc/slots/0
++ CONDA_PREFIX=/var/lib/boinc/slots/0
++ export _CONDA_PACK_OLD_PS1=
++ _CONDA_PACK_OLD_PS1=
++ PATH=/var/lib/boinc/slots/0/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:.
++ PS1='(0) '
++ case "$_CONDA_SHELL_FLAVOR" in
++ hash -r
++ local _script_dir=/var/lib/boinc/slots/0/etc/conda/activate.d
++ '[' -d /var/lib/boinc/slots/0/etc/conda/activate.d ']'
+ export PATH=/var/lib/boinc/slots/0:/var/lib/boinc/slots/0/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:.
+ PATH=/var/lib/boinc/slots/0:/var/lib/boinc/slots/0/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:.
+ echo 'Create a temporary directory'
+ export TMP=/var/lib/boinc/slots/0/tmp
+ TMP=/var/lib/boinc/slots/0/tmp
+ mkdir -p /var/lib/boinc/slots/0/tmp
+ echo 'Configure AToM'
+ echo localhost,0:0,1,CUDA,,/var/lib/boinc/slots/0/tmp
+ FILE=starting_sample
+ '[' -f starting_sample ']'
+ echo 'starting_sample does not exist.'
+ echo 'Install ATM and deps'
+ python -m pip list
+ python -m pip install pyaml==26.2.1 -v
+ python -m pip install --no-dependencies atom-openmm==8.4.0 -v
+ python -m pip list
+ echo 'Extract restart'
+ tar xjvf restart.tar.bz2
+ echo 'Run AToM'
+ CONFIG_FILE=QB_A34_A12_input.yaml
+ python bin/rbfe_production QB_A34_A12_input.yaml
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Traceback (most recent call last):
  File "/var/lib/boinc/slots/0/bin/rbfe_production", line 8, in <module>
    sys.exit(rbfe_production())
             ^^^^^^^^^^^^^^^^^
  File "/var/lib/boinc/slots/0/lib/python3.11/site-packages/atom_openmm/rbfe_production.py", line 29, in rbfe_production
    rx = openmm_job_RBFE(
         ^^^^^^^^^^^^^^^^
  File "/var/lib/boinc/slots/0/lib/python3.11/site-packages/atom_openmm/openmm_async_re.py", line 443, in __init__
    self.openmm_workers.append(ommworkercls(self.basename, ommsys, self.keywords, node_info = node, compute = True, logger = self.logger))
                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/var/lib/boinc/slots/0/lib/python3.11/site-packages/atom_openmm/ommworker.py", line 53, in __init__
    self.start_worker()
  File "/var/lib/boinc/slots/0/lib/python3.11/site-packages/atom_openmm/ommworker.py", line 443, in start_worker
    self._openmm_worker_body()
  File "/var/lib/boinc/slots/0/lib/python3.11/site-packages/atom_openmm/ommworker.py", line 198, in _openmm_worker_body
    self.ommsystem.create_system()
  File "/var/lib/boinc/slots/0/lib/python3.11/site-packages/atom_openmm/ommsystem.py", line 889, in create_system
    self.set_atmforce()
  File "/var/lib/boinc/slots/0/lib/python3.11/site-packages/atom_openmm/ommsystem.py", line 853, in set_atmforce
    self.add_forces_to_atmforce()
  File "/var/lib/boinc/slots/0/lib/python3.11/site-packages/atom_openmm/ommsystem.py", line 234, in add_forces_to_atmforce
    force14 = separate14(self.system.getForce(i))
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/var/lib/boinc/slots/0/lib/python3.11/site-packages/atom_openmm/utils/AtomUtils.py", line 817, in separate14
    force14.addBond(p1, p2, [chargeprod, sigma, epsilon])
  File "/var/lib/boinc/slots/0/lib/python3.11/site-packages/openmm/openmm.py", line 15083, in addBond
    return _openmm.CustomBondForce_addBond(self, *args)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: in method CustomBondForce_addBond, argument 4 could not be converted to type std::vector< double,std::allocator< double > > const &
2026-10-26 17:17:12 (318396): bin/bash exited; CPU time 13.971725
2026-10-26 17:17:12 (318396): app exit status: 0x1
2026-10-26 17:17:12 (318396): called boinc_finish(195)

</stderr_txt>
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