Task 38676753

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
07:39:53 (10280): wrapper (7.9.26016): starting
07:39:53 (10280): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
07:39:55 (10280): Library/usr/bin/tar.exe exited; CPU time 0.000000
07:39:55 (10280): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {3835161} normal block at 0x000001B8B014FB90, 8 bytes long.
 Data: <  ^     > 00 00 5E B0 B8 01 00 00 
..\lib\diagnostics_win.cpp(417) : {3833956} normal block at 0x000001B8B022E990, 1080 bytes long.
 Data: < Y      P       > 00 59 00 00 CD CD CD CD 50 02 00 00 00 00 00 00 
..\zip\boinc_zip.cpp(122) : {310} normal block at 0x000001B8B014D9E0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
Object dump complete.
07:46:04 (27204): wrapper (7.9.26016): starting
07:46:04 (27204): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\0\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1508} normal block at 0x0000026E69026000, 8 bytes long.
 Data: <  <in   > 00 00 3C 69 6E 02 00 00 
..\lib\diagnostics_win.cpp(417) : {303} normal block at 0x0000026E69026B10, 1080 bytes long.
 Data: <DD      P       > 44 44 00 00 CD CD CD CD 50 01 00 00 00 00 00 00 
Object dump complete.
08:17:46 (16820): wrapper (7.9.26016): starting
08:17:46 (16820): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\0\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1508} normal block at 0x00000171BFAE62B0, 8 bytes long.
 Data: <    q   > 00 00 AA BF 71 01 00 00 
..\lib\diagnostics_win.cpp(417) : {303} normal block at 0x00000171BFAE6730, 1080 bytes long.
 Data: < <      H       > 0C 3C 00 00 CD CD CD CD 48 01 00 00 00 00 00 00 
Object dump complete.
08:27:43 (27560): wrapper (7.9.26016): starting
08:27:43 (27560): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\0\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1508} normal block at 0x00000275760D6660, 8 bytes long.
 Data: <  `vu   > 00 00 60 76 75 02 00 00 
..\lib\diagnostics_win.cpp(417) : {303} normal block at 0x00000275760D6AE0, 1080 bytes long.
 Data: < .      d       > D8 2E 00 00 CD CD CD CD 64 01 00 00 00 00 00 00 
Object dump complete.
08:32:47 (18452): wrapper (7.9.26016): starting
08:32:47 (18452): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\0\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1508} normal block at 0x000001DDA5846820, 8 bytes long.
 Data: <        > 00 00 D0 A5 DD 01 00 00 
..\lib\diagnostics_win.cpp(417) : {303} normal block at 0x000001DDA5846B10, 1080 bytes long.
 Data: <<V      P       > 3C 56 00 00 CD CD CD CD 50 01 00 00 00 00 00 00 
Object dump complete.
08:45:50 (21800): wrapper (7.9.26016): starting
08:45:50 (21800): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\0\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1508} normal block at 0x00000215A3D66050, 8 bytes long.
 Data: <  +     > 00 00 2B A4 15 02 00 00 
..\lib\diagnostics_win.cpp(417) : {303} normal block at 0x00000215A3D66B10, 1080 bytes long.
 Data: < V      P       > C8 56 00 00 CD CD CD CD 50 01 00 00 00 00 00 00 
Object dump complete.
08:52:56 (13780): wrapper (7.9.26016): starting
08:52:56 (13780): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\0\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1508} normal block at 0x00000285F0456410, 8 bytes long.
 Data: <        > 00 00 91 F0 85 02 00 00 
..\lib\diagnostics_win.cpp(417) : {303} normal block at 0x00000285F0456BB0, 1080 bytes long.
 Data: < g      P       > A8 67 00 00 CD CD CD CD 50 01 00 00 00 00 00 00 
Object dump complete.
09:02:34 (15904): wrapper (7.9.26016): starting
09:02:34 (15904): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\0\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1508} normal block at 0x0000022ACECC6460, 8 bytes long.
 Data: <    *   > 00 00 16 CF 2A 02 00 00 
..\lib\diagnostics_win.cpp(417) : {303} normal block at 0x0000022ACECC6BB0, 1080 bytes long.
 Data: < M      H       > CC 4D 00 00 CD CD CD CD 48 01 00 00 00 00 00 00 
Object dump complete.
09:10:11 (2740): wrapper (7.9.26016): starting
09:10:11 (2740): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\0\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1508} normal block at 0x000001BFB15E5C40, 8 bytes long.
 Data: <        > 00 00 95 B1 BF 01 00 00 
..\lib\diagnostics_win.cpp(417) : {303} normal block at 0x000001BFB15E6A70, 1080 bytes long.
 Data: <X8      d       > 58 38 00 00 CD CD CD CD 64 01 00 00 00 00 00 00 
Object dump complete.
09:18:28 (23208): wrapper (7.9.26016): starting
09:18:28 (23208): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\0\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1508} normal block at 0x000001F20FB86A50, 8 bytes long.
 Data: <        > 00 00 B1 0F F2 01 00 00 
..\lib\diagnostics_win.cpp(417) : {303} normal block at 0x000001F20FB86BB0, 1080 bytes long.
 Data: <hI      P       > 68 49 00 00 CD CD CD CD 50 01 00 00 00 00 00 00 
Object dump complete.
09:41:03 (12508): wrapper (7.9.26016): starting
09:41:03 (12508): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\0\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1508} normal block at 0x000001D89D1D6220, 8 bytes long.
 Data: <        > 00 00 16 9D D8 01 00 00 
..\lib\diagnostics_win.cpp(417) : {303} normal block at 0x000001D89D1D6830, 1080 bytes long.
 Data: < :      L       > E8 3A 00 00 CD CD CD CD 4C 01 00 00 00 00 00 00 
Object dump complete.
10:08:31 (20340): wrapper (7.9.26016): starting
10:08:31 (20340): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\0\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1508} normal block at 0x000001B2600D64B0, 8 bytes long.
 Data: <  X`    > 00 00 58 60 B2 01 00 00 
..\lib\diagnostics_win.cpp(417) : {303} normal block at 0x000001B2600D6B10, 1080 bytes long.
 Data: < d      H       > 08 64 00 00 CD CD CD CD 48 01 00 00 00 00 00 00 
Object dump complete.
11:12:16 (24488): wrapper (7.9.26016): starting
11:12:16 (24488): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\0\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
11:20:00 (24488): C:/Windows/system32/cmd.exe exited; CPU time 422.312500
11:20:00 (24488): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 8613804 bytes.
Dumping objects ->
{1596} normal block at 0x0000022D45B15040, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1585} normal block at 0x0000022D45B14FD0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1574} normal block at 0x0000022D45B14F60, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{1563} normal block at 0x0000022D45B14EF0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1552} normal block at 0x0000022D45B14E80, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{1521} normal block at 0x0000022D45AFFD60, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {1508} normal block at 0x0000022D45B16000, 8 bytes long.
 Data: <   E-   > 00 00 AB 45 2D 02 00 00 
{304} normal block at 0x0000022D45B15DD0, 8 bytes long.
 Data: <`k E-   > 60 6B B1 45 2D 02 00 00 
{295} normal block at 0x0000022D45B068A0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{294} normal block at 0x0000022D45B16460, 16 bytes long.
 Data: <XZ E-           > 58 5A B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x0000022D45B15C90, 16 bytes long.
 Data: <0Z E-           > 30 5A B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000022D45B0ECC0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{291} normal block at 0x0000022D45B165F0, 16 bytes long.
 Data: < Z E-           > 08 5A B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000022D45B15D80, 16 bytes long.
 Data: < Y E-           > E0 59 B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x0000022D45B15E20, 16 bytes long.
 Data: < Y E-           > B8 59 B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x0000022D45B162D0, 16 bytes long.
 Data: < Y E-           > 90 59 B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000022D45B14E10, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{286} normal block at 0x0000022D45B15F10, 16 bytes long.
 Data: <   E-           > 98 B7 AF 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000022D45B0FA40, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{284} normal block at 0x0000022D45B16640, 16 bytes long.
 Data: <p  E-           > 70 B7 AF 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000022D45B15D30, 16 bytes long.
 Data: <H  E-           > 48 B7 AF 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000022D45B15CE0, 16 bytes long.
 Data: <   E-           > 20 B7 AF 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000022D45B15EC0, 16 bytes long.
 Data: <   E-           > F8 B6 AF 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000022D45B16320, 16 bytes long.
 Data: <   E-           > D0 B6 AF 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000022D45B15F60, 16 bytes long.
 Data: <   E-           > A8 B6 AF 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x0000022D45B0ED80, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{276} normal block at 0x0000022D45B165A0, 16 bytes long.
 Data: <   E-           > 80 B6 AF 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000022D45AFB680, 320 bytes long.
 Data: < e E-      E-   > A0 65 B1 45 2D 02 00 00 80 ED B0 45 2D 02 00 00 
{274} normal block at 0x0000022D45B16960, 16 bytes long.
 Data: <pY E-           > 70 59 B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x0000022D45B16730, 16 bytes long.
 Data: <HY E-           > 48 59 B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x0000022D45B0F4A0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{271} normal block at 0x0000022D45B16140, 16 bytes long.
 Data: < Y E-           > 20 59 B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000022D45B0EF60, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{269} normal block at 0x0000022D45B16A00, 16 bytes long.
 Data: <hX E-           > 68 58 B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000022D45B16870, 16 bytes long.
 Data: <@X E-           > 40 58 B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000022D45B15FB0, 16 bytes long.
 Data: < X E-           > 18 58 B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x0000022D45B166E0, 16 bytes long.
 Data: < W E-           > F0 57 B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000022D45B0FDA0, 16 bytes long.
 Data: < W E-           > C8 57 B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000022D45B10A70, 16 bytes long.
 Data: < W E-           > A0 57 B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000022D45B10250, 16 bytes long.
 Data: < Q E-           > 90 51 B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x0000022D45B15190, 40 bytes long.
 Data: <P  E-   `  E-   > 50 02 B1 45 2D 02 00 00 60 FD AF 45 2D 02 00 00 
{260} normal block at 0x0000022D45B10930, 16 bytes long.
 Data: < W E-           > 80 57 B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x0000022D45B0FD50, 16 bytes long.
 Data: <XW E-           > 58 57 B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x0000022D45B0F260, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{257} normal block at 0x0000022D45B10A20, 16 bytes long.
 Data: <0W E-           > 30 57 B1 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x0000022D45B15730, 992 bytes long.
 Data: <   E-   `  E-   > 20 0A B1 45 2D 02 00 00 60 F2 B0 45 2D 02 00 00 
{92} normal block at 0x0000022D45B0F440, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{91} normal block at 0x0000022D45B109D0, 16 bytes long.
 Data: <   E-           > 80 E7 AF 45 2D 02 00 00 00 00 00 00 00 00 00 00 
{90} normal block at 0x0000022D45AFE780, 40 bytes long.
 Data: <   E-   @  E-   > D0 09 B1 45 2D 02 00 00 40 F4 B0 45 2D 02 00 00 
{69} normal block at 0x0000022D45B10570, 16 bytes long.
 Data: <                > 80 EA CF ED F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x0000022D45B10520, 16 bytes long.
 Data: <@               > 40 E9 CF ED F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x0000022D45B10340, 16 bytes long.
 Data: < W              > F8 57 CC ED F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000022D45B10160, 16 bytes long.
 Data: < W              > D8 57 CC ED F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000022D45B100C0, 16 bytes long.
 Data: <P               > 50 04 CC ED F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000022D45B0FE90, 16 bytes long.
 Data: <0               > 30 04 CC ED F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000022D45B10B10, 16 bytes long.
 Data: <                > E0 02 CC ED F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x0000022D45B102F0, 16 bytes long.
 Data: <                > 10 04 CC ED F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x0000022D45B10660, 16 bytes long.
 Data: <p               > 70 04 CC ED F7 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x0000022D45B101B0, 16 bytes long.
 Data: <                > 18 C0 CA ED F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>

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