Task 38673377

Name test_939-GPUGRID_TEST_ATM_40STEP_20261023-21-40-RND7109_0
Workunit 31615462
Created 26 Oct 2026, 2:14:54 UTC
Sent 26 Oct 2026, 2:14:59 UTC
Report deadline 31 Oct 2026, 2:14:59 UTC
Received 26 Oct 2026, 2:38:19 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 648120
Run time 22 min 23 sec
CPU time 17 min 54 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 48,740.91 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 757.91 MB
Peak swap size 13.03 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
03:16:06 (44296): wrapper (7.9.26016): starting
03:16:06 (44296): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
03:16:07 (44296): Library/usr/bin/tar.exe exited; CPU time 0.000000
03:16:07 (44296): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\11\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\11\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
03:37:42 (44296): C:/Windows/system32/cmd.exe exited; CPU time 1074.953125
03:37:42 (44296): called boinc_finish(0)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 34256115 bytes.
Dumping objects ->
{3835618} normal block at 0x000002139E89D9D0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835607} normal block at 0x000002139E89D3B0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835596} normal block at 0x000002139CBA4890, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835585} normal block at 0x000002139CBA4820, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835574} normal block at 0x000002139CBA47B0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835543} normal block at 0x000002139E8E4900, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835532} normal block at 0x000002139E8FE890, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835529} normal block at 0x000002139CB9E850, 8 bytes long.
 Data: <  &#183;&#156;    > 00 00 B7 9C 13 02 00 00 
{3834721} normal block at 0x000002139E8FE310, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833963} normal block at 0x000002139CB9EAD0, 8 bytes long.
 Data: < E&#148;&#158;    > 90 45 94 9E 13 02 00 00 
..\zip\boinc_zip.cpp(122) : {313} normal block at 0x000002139CBA14A0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x000002139CB96120, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{297} normal block at 0x000002139CBA5620, 16 bytes long.
 Data: <8f&#186;&#156;            > 38 66 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x000002139CBA5710, 16 bytes long.
 Data: < f&#186;&#156;            > 10 66 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x000002139CBA0290, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{294} normal block at 0x000002139CBA60C0, 16 bytes long.
 Data: <&#232;e&#186;&#156;            > E8 65 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000002139CBA5580, 16 bytes long.
 Data: <&#192;e&#186;&#156;            > C0 65 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000002139CBA53A0, 16 bytes long.
 Data: < e&#186;&#156;            > 98 65 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x000002139CBA5A30, 16 bytes long.
 Data: <pe&#186;&#156;            > 70 65 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000002139CBA4D60, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{289} normal block at 0x000002139CBA55D0, 16 bytes long.
 Data: < &#181;&#184;&#156;            > 88 B5 B8 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000002139CBA00B0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{287} normal block at 0x000002139CBA5990, 16 bytes long.
 Data: <`&#181;&#184;&#156;            > 60 B5 B8 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000002139CBA5C60, 16 bytes long.
 Data: <8&#181;&#184;&#156;            > 38 B5 B8 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000002139CBA5E40, 16 bytes long.
 Data: < &#181;&#184;&#156;            > 10 B5 B8 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000002139CBA5800, 16 bytes long.
 Data: <&#232;&#180;&#184;&#156;            > E8 B4 B8 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000002139CBA5A80, 16 bytes long.
 Data: <&#192;&#180;&#184;&#156;            > C0 B4 B8 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000002139CBA6070, 16 bytes long.
 Data: < &#180;&#184;&#156;            > 98 B4 B8 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000002139CB9FC30, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{279} normal block at 0x000002139CBA5440, 16 bytes long.
 Data: <p&#180;&#184;&#156;            > 70 B4 B8 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000002139CB8B470, 320 bytes long.
 Data: <@T&#186;&#156;    0&#252;&#185;&#156;    > 40 54 BA 9C 13 02 00 00 30 FC B9 9C 13 02 00 00 
{277} normal block at 0x000002139CBA5DF0, 16 bytes long.
 Data: <Pe&#186;&#156;            > 50 65 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000002139CBA5350, 16 bytes long.
 Data: <(e&#186;&#156;            > 28 65 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000002139CBA0230, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{274} normal block at 0x000002139CBA62A0, 16 bytes long.
 Data: < e&#186;&#156;            > 00 65 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000002139CBA03B0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{272} normal block at 0x000002139CBA6250, 16 bytes long.
 Data: <Hd&#186;&#156;            > 48 64 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000002139CBA5B20, 16 bytes long.
 Data: < d&#186;&#156;            > 20 64 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000002139CBA6200, 16 bytes long.
 Data: <&#248;c&#186;&#156;            > F8 63 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000002139CBA5670, 16 bytes long.
 Data: <&#208;c&#186;&#156;            > D0 63 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000002139CBA5D00, 16 bytes long.
 Data: <&#168;c&#186;&#156;            > A8 63 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000002139CBA5C10, 16 bytes long.
 Data: < c&#186;&#156;            > 80 63 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000002139CBA5F80, 16 bytes long.
 Data: <&#208;M&#186;&#156;            > D0 4D BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000002139CBA4DD0, 40 bytes long.
 Data: < _&#186;&#156;     I&#142;&#158;    > 80 5F BA 9C 13 02 00 00 00 49 8E 9E 13 02 00 00 
{263} normal block at 0x000002139CBA5850, 16 bytes long.
 Data: <`c&#186;&#156;            > 60 63 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000002139CBA5490, 16 bytes long.
 Data: <8c&#186;&#156;            > 38 63 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000002139CB9FED0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{260} normal block at 0x000002139CBA54E0, 16 bytes long.
 Data: < c&#186;&#156;            > 10 63 BA 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000002139CBA6310, 992 bytes long.
 Data: <&#224;T&#186;&#156;    &#208;&#254;&#185;&#156;    > E0 54 BA 9C 13 02 00 00 D0 FE B9 9C 13 02 00 00 
{95} normal block at 0x000002139CBA0710, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{94} normal block at 0x000002139CB9F610, 16 bytes long.
 Data: <p&#193;&#184;&#156;            > 70 C1 B8 9C 13 02 00 00 00 00 00 00 00 00 00 00 
{93} normal block at 0x000002139CB8C170, 40 bytes long.
 Data: < &#246;&#185;&#156;      &#186;&#156;    > 10 F6 B9 9C 13 02 00 00 10 07 BA 9C 13 02 00 00 
{72} normal block at 0x000002139CB9F200, 16 bytes long.
 Data: < &#234;&#134;&#200;&#246;           > 80 EA 86 C8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x000002139CB9F2A0, 16 bytes long.
 Data: <@&#233;&#134;&#200;&#246;           > 40 E9 86 C8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x000002139CB9F480, 16 bytes long.
 Data: <&#248;W&#131;&#200;&#246;           > F8 57 83 C8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000002139CB9F660, 16 bytes long.
 Data: <&#216;W&#131;&#200;&#246;           > D8 57 83 C8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000002139CB9F5C0, 16 bytes long.
 Data: <P &#131;&#200;&#246;           > 50 04 83 C8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000002139CB9EF80, 16 bytes long.
 Data: <0 &#131;&#200;&#246;           > 30 04 83 C8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000002139CB9F430, 16 bytes long.
 Data: <&#224; &#131;&#200;&#246;           > E0 02 83 C8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000002139CB9EE40, 16 bytes long.
 Data: <  &#131;&#200;&#246;           > 10 04 83 C8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000002139CB9ECB0, 16 bytes long.
 Data: <p &#131;&#200;&#246;           > 70 04 83 C8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000002139CB9F160, 16 bytes long.
 Data: < &#192; &#200;&#246;           > 18 C0 81 C8 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


©2026 Universitat Pompeu Fabra