Task 38672637

Name test_559-GPUGRID_TEST_ATM_40STEP_20261023-14-40-RND4092_0
Workunit 31614764
Created 26 Oct 2026, 0:00:57 UTC
Sent 26 Oct 2026, 0:01:09 UTC
Report deadline 31 Oct 2026, 0:01:09 UTC
Received 26 Oct 2026, 4:00:31 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 562809
Run time 1 hours 14 min 48 sec
CPU time 1 hours 9 min 43 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 9,255.46 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 647.69 MB
Peak swap size 5.32 GB
Peak disk usage 3.02 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
20:47:45 (12208): wrapper (7.9.26016): starting
20:47:45 (12208): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
20:47:48 (12208): Library/usr/bin/tar.exe exited; CPU time 0.000000
20:47:48 (12208): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\10\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\10\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
21:59:42 (12208): C:/Windows/system32/cmd.exe exited; CPU time 4183.578125
21:59:42 (12208): called boinc_finish(0)
0 bytes in 0 Free Blocks.
726 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 50292887 bytes.
Dumping objects ->
{3835251} normal block at 0x00000220E1451090, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835240} normal block at 0x00000220E14513A0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835229} normal block at 0x00000220E1451640, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835218} normal block at 0x00000220E1451330, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835207} normal block at 0x00000220E1450A00, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835176} normal block at 0x00000220E14FC940, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835165} normal block at 0x00000220DFA72A30, 235 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835162} normal block at 0x00000220DFA66670, 8 bytes long.
 Data: <  f&#225;    > 00 00 66 E1 20 02 00 00 
{3834555} normal block at 0x00000220DFA72DC0, 235 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833945} normal block at 0x00000220DFA662B0, 8 bytes long.
 Data: <&#192; F&#225;    > C0 10 46 E1 20 02 00 00 
..\zip\boinc_zip.cpp(122) : {304} normal block at 0x00000220DFA6FE90, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x00000220DFA5AE00, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{288} normal block at 0x00000220DFA71B00, 16 bytes long.
 Data: < 3&#167;&#223;            > 98 33 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x00000220DFA71A10, 16 bytes long.
 Data: <p3&#167;&#223;            > 70 33 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x00000220DFA6C700, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{285} normal block at 0x00000220DFA710B0, 16 bytes long.
 Data: <H3&#167;&#223;            > 48 33 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x00000220DFA719C0, 16 bytes long.
 Data: < 3&#167;&#223;            > 20 33 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x00000220DFA71880, 16 bytes long.
 Data: <&#248;2&#167;&#223;            > F8 32 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x00000220DFA71830, 16 bytes long.
 Data: <&#208;2&#167;&#223;            > D0 32 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x00000220DFA6B680, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{280} normal block at 0x00000220DFA71BF0, 16 bytes long.
 Data: <&#216;Z&#165;&#223;            > D8 5A A5 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x00000220DFA6CFA0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{278} normal block at 0x00000220DFA716A0, 16 bytes long.
 Data: <&#176;Z&#165;&#223;            > B0 5A A5 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x00000220DFA71740, 16 bytes long.
 Data: < Z&#165;&#223;            > 88 5A A5 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x00000220DFA71790, 16 bytes long.
 Data: <`Z&#165;&#223;            > 60 5A A5 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x00000220DFA714C0, 16 bytes long.
 Data: <8Z&#165;&#223;            > 38 5A A5 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x00000220DFA71290, 16 bytes long.
 Data: < Z&#165;&#223;            > 10 5A A5 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x00000220DFA71AB0, 16 bytes long.
 Data: <&#232;Y&#165;&#223;            > E8 59 A5 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x00000220DFA6C5E0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{270} normal block at 0x00000220DFA71470, 16 bytes long.
 Data: <&#192;Y&#165;&#223;            > C0 59 A5 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x00000220DFA559C0, 320 bytes long.
 Data: <p &#167;&#223;    &#224;&#197;&#166;&#223;    > 70 14 A7 DF 20 02 00 00 E0 C5 A6 DF 20 02 00 00 
{268} normal block at 0x00000220DFA71970, 16 bytes long.
 Data: <&#176;2&#167;&#223;            > B0 32 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x00000220DFA71330, 16 bytes long.
 Data: < 2&#167;&#223;            > 88 32 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x00000220DFA6C940, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{265} normal block at 0x00000220DFA71650, 16 bytes long.
 Data: <`2&#167;&#223;            > 60 32 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x00000220DFA6CB20, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{263} normal block at 0x00000220DFA70FC0, 16 bytes long.
 Data: <&#168;1&#167;&#223;            > A8 31 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x00000220DFA70CF0, 16 bytes long.
 Data: < 1&#167;&#223;            > 80 31 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x00000220DFA71060, 16 bytes long.
 Data: <X1&#167;&#223;            > 58 31 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x00000220DFA717E0, 16 bytes long.
 Data: <01&#167;&#223;            > 30 31 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x00000220DFA70D90, 16 bytes long.
 Data: < 1&#167;&#223;            > 08 31 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x00000220DFA71920, 16 bytes long.
 Data: <&#224;0&#167;&#223;            > E0 30 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x00000220DFA70F70, 16 bytes long.
 Data: <&#224;&#179;&#166;&#223;            > E0 B3 A6 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{255} normal block at 0x00000220DFA6B3E0, 40 bytes long.
 Data: <p &#167;&#223;    @&#201;O&#225;    > 70 0F A7 DF 20 02 00 00 40 C9 4F E1 20 02 00 00 
{254} normal block at 0x00000220DFA713D0, 16 bytes long.
 Data: <&#192;0&#167;&#223;            > C0 30 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{253} normal block at 0x00000220DFA715B0, 16 bytes long.
 Data: < 0&#167;&#223;            > 98 30 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{252} normal block at 0x00000220DFA6CAC0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{251} normal block at 0x00000220DFA71240, 16 bytes long.
 Data: <p0&#167;&#223;            > 70 30 A7 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{250} normal block at 0x00000220DFA73070, 992 bytes long.
 Data: <@ &#167;&#223;    &#192;&#202;&#166;&#223;    > 40 12 A7 DF 20 02 00 00 C0 CA A6 DF 20 02 00 00 
{86} normal block at 0x00000220DFA6CA60, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{85} normal block at 0x00000220DFA663A0, 16 bytes long.
 Data: <&#208;&#176;&#166;&#223;            > D0 B0 A6 DF 20 02 00 00 00 00 00 00 00 00 00 00 
{84} normal block at 0x00000220DFA6B0D0, 40 bytes long.
 Data: <&#160;c&#166;&#223;    `&#202;&#166;&#223;    > A0 63 A6 DF 20 02 00 00 60 CA A6 DF 20 02 00 00 
{63} normal block at 0x00000220DFA66DF0, 16 bytes long.
 Data: < &#234;&&#243;&#247;           > 80 EA 26 F3 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x00000220DFA67160, 16 bytes long.
 Data: <@&#233;&&#243;&#247;           > 40 E9 26 F3 F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x00000220DFA669E0, 16 bytes long.
 Data: <&#248;W#&#243;&#247;           > F8 57 23 F3 F7 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x00000220DFA66620, 16 bytes long.
 Data: <&#216;W#&#243;&#247;           > D8 57 23 F3 F7 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x00000220DFA66990, 16 bytes long.
 Data: <P #&#243;&#247;           > 50 04 23 F3 F7 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x00000220DFA66C60, 16 bytes long.
 Data: <0 #&#243;&#247;           > 30 04 23 F3 F7 7F 00 00 00 00 00 00 00 00 00 00 
{57} normal block at 0x00000220DFA66940, 16 bytes long.
 Data: <&#224; #&#243;&#247;           > E0 02 23 F3 F7 7F 00 00 00 00 00 00 00 00 00 00 
{56} normal block at 0x00000220DFA66530, 16 bytes long.
 Data: <  #&#243;&#247;           > 10 04 23 F3 F7 7F 00 00 00 00 00 00 00 00 00 00 
{55} normal block at 0x00000220DFA66C10, 16 bytes long.
 Data: <p #&#243;&#247;           > 70 04 23 F3 F7 7F 00 00 00 00 00 00 00 00 00 00 
{54} normal block at 0x00000220DFA66CB0, 16 bytes long.
 Data: < &#192;!&#243;&#247;           > 18 C0 21 F3 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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