Task 38671304

Name test_279-GPUGRID_TEST_ATM_40STEP_20261023-22-40-RND1569_1
Workunit 31612855
Created 25 Oct 2026, 20:07:40 UTC
Sent 25 Oct 2026, 20:07:45 UTC
Report deadline 30 Oct 2026, 20:07:45 UTC
Received 25 Oct 2026, 20:59:52 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 615292
Run time 31 min 17 sec
CPU time 25 min 50 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 7,314.97 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 695.15 MB
Peak swap size 6.74 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
14:28:42 (16356): wrapper (7.9.26016): starting
14:28:42 (16356): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
14:28:43 (16356): Library/usr/bin/tar.exe exited; CPU time 0.000000
14:28:43 (16356): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
14:59:12 (16356): C:/Windows/system32/cmd.exe exited; CPU time 1550.828125
14:59:12 (16356): called boinc_finish(0)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 28336739 bytes.
Dumping objects ->
{3835226} normal block at 0x0000028685995AB0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835215} normal block at 0x00000286859959D0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835204} normal block at 0x0000028685995E30, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835193} normal block at 0x0000028685995C70, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835182} normal block at 0x0000028685995C00, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835151} normal block at 0x000002868761A860, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835140} normal block at 0x000002868762F3B0, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835137} normal block at 0x000002868598EB40, 8 bytes long.
 Data: <  &#218;&#133;&#134;   > 00 00 DA 85 86 02 00 00 
{3834539} normal block at 0x000002868762F300, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833961} normal block at 0x000002868598EA50, 8 bytes long.
 Data: <`Gg&#135;&#134;   > 60 47 67 87 86 02 00 00 
..\zip\boinc_zip.cpp(122) : {312} normal block at 0x0000028685990E80, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x00000286859869D0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{296} normal block at 0x00000286859969E0, 16 bytes long.
 Data: < u &#133;&#134;           > 98 75 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x0000028685996C10, 16 bytes long.
 Data: <pu &#133;&#134;           > 70 75 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x0000028685990090, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{293} normal block at 0x0000028685996F80, 16 bytes long.
 Data: <Hu &#133;&#134;           > 48 75 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000028685996530, 16 bytes long.
 Data: < u &#133;&#134;           > 20 75 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000028685996EE0, 16 bytes long.
 Data: <&#248;t &#133;&#134;           > F8 74 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000028685996440, 16 bytes long.
 Data: <&#208;t &#133;&#134;           > D0 74 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x0000028685995EA0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{288} normal block at 0x0000028685996D00, 16 bytes long.
 Data: <&#216;&#142; &#133;&#134;           > D8 8E 98 85 86 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000028685990030, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{286} normal block at 0x0000028685996350, 16 bytes long.
 Data: <&#176;&#142; &#133;&#134;           > B0 8E 98 85 86 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000028685996580, 16 bytes long.
 Data: < &#142; &#133;&#134;           > 88 8E 98 85 86 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x00000286859964E0, 16 bytes long.
 Data: <`&#142; &#133;&#134;           > 60 8E 98 85 86 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000028685997160, 16 bytes long.
 Data: <8&#142; &#133;&#134;           > 38 8E 98 85 86 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000028685996490, 16 bytes long.
 Data: < &#142; &#133;&#134;           > 10 8E 98 85 86 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000028685997020, 16 bytes long.
 Data: <&#232;  &#133;&#134;           > E8 8D 98 85 86 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000028685990210, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{278} normal block at 0x00000286859963A0, 16 bytes long.
 Data: <&#192;  &#133;&#134;           > C0 8D 98 85 86 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x0000028685988DC0, 320 bytes long.
 Data: <&#160;c &#133;&#134;      &#133;&#134;   > A0 63 99 85 86 02 00 00 10 02 99 85 86 02 00 00 
{276} normal block at 0x0000028685996990, 16 bytes long.
 Data: <&#176;t &#133;&#134;           > B0 74 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x00000286859966C0, 16 bytes long.
 Data: < t &#133;&#134;           > 88 74 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x000002868598FFD0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{273} normal block at 0x0000028685996BC0, 16 bytes long.
 Data: <`t &#133;&#134;           > 60 74 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000002868598FF70, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{271} normal block at 0x0000028685996940, 16 bytes long.
 Data: <&#168;s &#133;&#134;           > A8 73 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000028685996DF0, 16 bytes long.
 Data: < s &#133;&#134;           > 80 73 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x00000286859968F0, 16 bytes long.
 Data: <Xs &#133;&#134;           > 58 73 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000028685996620, 16 bytes long.
 Data: <0s &#133;&#134;           > 30 73 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x00000286859962B0, 16 bytes long.
 Data: < s &#133;&#134;           > 08 73 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x0000028685996CB0, 16 bytes long.
 Data: <&#224;r &#133;&#134;           > E0 72 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000028685996300, 16 bytes long.
 Data: < _ &#133;&#134;           > 80 5F 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x0000028685995F80, 40 bytes long.
 Data: < c &#133;&#134;   `&#168;a&#135;&#134;   > 00 63 99 85 86 02 00 00 60 A8 61 87 86 02 00 00 
{262} normal block at 0x00000286859963F0, 16 bytes long.
 Data: <&#192;r &#133;&#134;           > C0 72 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x00000286859965D0, 16 bytes long.
 Data: < r &#133;&#134;           > 98 72 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x000002868598FEB0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{259} normal block at 0x0000028685996F30, 16 bytes long.
 Data: <pr &#133;&#134;           > 70 72 99 85 86 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x0000028685997270, 992 bytes long.
 Data: <0o &#133;&#134;   &#176;&#254; &#133;&#134;   > 30 6F 99 85 86 02 00 00 B0 FE 98 85 86 02 00 00 
{94} normal block at 0x000002868598FD30, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{93} normal block at 0x000002868598E7D0, 16 bytes long.
 Data: <&#160;&#228; &#133;&#134;           > A0 E4 98 85 86 02 00 00 00 00 00 00 00 00 00 00 
{92} normal block at 0x000002868598E4A0, 40 bytes long.
 Data: <&#208;&#231; &#133;&#134;   0&#253; &#133;&#134;   > D0 E7 98 85 86 02 00 00 30 FD 98 85 86 02 00 00 
{71} normal block at 0x000002868598F4F0, 16 bytes long.
 Data: < &#234;&#151; &#246;           > 80 EA 97 0D F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x000002868598EE60, 16 bytes long.
 Data: <@&#233;&#151; &#246;           > 40 E9 97 0D F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000002868598E870, 16 bytes long.
 Data: <&#248;W&#148; &#246;           > F8 57 94 0D F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000002868598EA00, 16 bytes long.
 Data: <&#216;W&#148; &#246;           > D8 57 94 0D F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000002868598E6E0, 16 bytes long.
 Data: <P &#148; &#246;           > 50 04 94 0D F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000002868598EBE0, 16 bytes long.
 Data: <0 &#148; &#246;           > 30 04 94 0D F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000002868598E9B0, 16 bytes long.
 Data: <&#224; &#148; &#246;           > E0 02 94 0D F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000002868598E960, 16 bytes long.
 Data: <  &#148; &#246;           > 10 04 94 0D F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000002868598E690, 16 bytes long.
 Data: <p &#148; &#246;           > 70 04 94 0D F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000002868598E820, 16 bytes long.
 Data: < &#192;&#146; &#246;           > 18 C0 92 0D F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


©2026 Universitat Pompeu Fabra