Task 38669494

Name test_705-GPUGRID_TEST_ATM_40STEP_20261023-11-40-RND2737_0
Workunit 31611835
Created 25 Oct 2026, 14:43:05 UTC
Sent 25 Oct 2026, 14:43:07 UTC
Report deadline 30 Oct 2026, 14:43:07 UTC
Received 25 Oct 2026, 16:02:30 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 652152
Run time 1 hours 5 min 56 sec
CPU time 57 min 42 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 9,462.82 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 676.29 MB
Peak swap size 5.25 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
10:58:34 (14000): wrapper (7.9.26016): starting
10:58:34 (14000): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
10:58:37 (14000): Library/usr/bin/tar.exe exited; CPU time 0.015625
10:58:37 (14000): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\5\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\5\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
12:02:08 (14000): C:/Windows/system32/cmd.exe exited; CPU time 3462.546875
12:02:08 (14000): called boinc_finish(0)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 54256549 bytes.
Dumping objects ->
{3835310} normal block at 0x000001B4D2AC13B0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835299} normal block at 0x000001B4D2AC1340, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835288} normal block at 0x000001B4D2AC1A40, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835277} normal block at 0x000001B4D2AC1E30, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835266} normal block at 0x000001B4D2AC1DC0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835235} normal block at 0x000001B4D2BB5FC0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835224} normal block at 0x000001B4D2BD1090, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835221} normal block at 0x000001B4D0F08BD0, 8 bytes long.
 Data: <  &#238;&#208;&#180;   > 00 00 EE D0 B4 01 00 00 
{3834583} normal block at 0x000001B4D2BD02D0, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833963} normal block at 0x000001B4D0F08860, 8 bytes long.
 Data: <`&#160;&#239;&#208;&#180;   > 60 A0 EF D0 B4 01 00 00 
..\zip\boinc_zip.cpp(122) : {313} normal block at 0x000001B4D0F140C0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x000001B4D0EFC030, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{297} normal block at 0x000001B4D0F151F0, 16 bytes long.
 Data: <(&#253;&#240;&#208;&#180;           > 28 FD F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x000001B4D0F15B50, 16 bytes long.
 Data: < &#253;&#240;&#208;&#180;           > 00 FD F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x000001B4D0F10B90, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{294} normal block at 0x000001B4D0F15EC0, 16 bytes long.
 Data: <&#216;&#252;&#240;&#208;&#180;           > D8 FC F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000001B4D0F15B00, 16 bytes long.
 Data: <&#176;&#252;&#240;&#208;&#180;           > B0 FC F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000001B4D0F156A0, 16 bytes long.
 Data: < &#252;&#240;&#208;&#180;           > 88 FC F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x000001B4D0F15650, 16 bytes long.
 Data: <`&#252;&#240;&#208;&#180;           > 60 FC F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000001B4D0F0DF90, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{289} normal block at 0x000001B4D0F15AB0, 16 bytes long.
 Data: <&#184;&#208;&#239;&#208;&#180;           > B8 D0 EF D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000001B4D0F105F0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{287} normal block at 0x000001B4D0F15A60, 16 bytes long.
 Data: < &#208;&#239;&#208;&#180;           > 90 D0 EF D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000001B4D0F15D80, 16 bytes long.
 Data: <h&#208;&#239;&#208;&#180;           > 68 D0 EF D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000001B4D0F154C0, 16 bytes long.
 Data: <@&#208;&#239;&#208;&#180;           > 40 D0 EF D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000001B4D0F15D30, 16 bytes long.
 Data: < &#208;&#239;&#208;&#180;           > 18 D0 EF D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000001B4D0F15CE0, 16 bytes long.
 Data: <&#240;&#207;&#239;&#208;&#180;           > F0 CF EF D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000001B4D0F15E70, 16 bytes long.
 Data: <&#200;&#207;&#239;&#208;&#180;           > C8 CF EF D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001B4D0F10A10, 32 bytes long.
 Data: <CUDA_DEVICE=1 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 31 00 50 55 
{279} normal block at 0x000001B4D0F15920, 16 bytes long.
 Data: <&#160;&#207;&#239;&#208;&#180;           > A0 CF EF D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000001B4D0EFCFA0, 320 bytes long.
 Data: < Y&#241;&#208;&#180;     &#241;&#208;&#180;   > 20 59 F1 D0 B4 01 00 00 10 0A F1 D0 B4 01 00 00 
{277} normal block at 0x000001B4D0F15600, 16 bytes long.
 Data: <@&#252;&#240;&#208;&#180;           > 40 FC F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000001B4D0F15060, 16 bytes long.
 Data: < &#252;&#240;&#208;&#180;           > 18 FC F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000001B4D0F10890, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{274} normal block at 0x000001B4D0F15BA0, 16 bytes long.
 Data: <&#240;&#251;&#240;&#208;&#180;           > F0 FB F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000001B4D0F10AD0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{272} normal block at 0x000001B4D0F15470, 16 bytes long.
 Data: <8&#251;&#240;&#208;&#180;           > 38 FB F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000001B4D0F155B0, 16 bytes long.
 Data: < &#251;&#240;&#208;&#180;           > 10 FB F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000001B4D0F15A10, 16 bytes long.
 Data: <&#232;&#250;&#240;&#208;&#180;           > E8 FA F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000001B4D0F15420, 16 bytes long.
 Data: <&#192;&#250;&#240;&#208;&#180;           > C0 FA F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000001B4D0F153D0, 16 bytes long.
 Data: < &#250;&#240;&#208;&#180;           > 98 FA F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000001B4D0F15330, 16 bytes long.
 Data: <p&#250;&#240;&#208;&#180;           > 70 FA F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000001B4D0F15C90, 16 bytes long.
 Data: <&#192;&#225;&#240;&#208;&#180;           > C0 E1 F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000001B4D0F0E1C0, 40 bytes long.
 Data: < \&#241;&#208;&#180;   &#192;_&#187;&#210;&#180;   > 90 5C F1 D0 B4 01 00 00 C0 5F BB D2 B4 01 00 00 
{263} normal block at 0x000001B4D0F151A0, 16 bytes long.
 Data: <P&#250;&#240;&#208;&#180;           > 50 FA F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000001B4D0F158D0, 16 bytes long.
 Data: <(&#250;&#240;&#208;&#180;           > 28 FA F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000001B4D0F10590, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{260} normal block at 0x000001B4D0F15880, 16 bytes long.
 Data: < &#250;&#240;&#208;&#180;           > 00 FA F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000001B4D0F0FA00, 992 bytes long.
 Data: < X&#241;&#208;&#180;     &#241;&#208;&#180;   > 80 58 F1 D0 B4 01 00 00 90 05 F1 D0 B4 01 00 00 
{95} normal block at 0x000001B4D0F10710, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{94} normal block at 0x000001B4D0F08F40, 16 bytes long.
 Data: <&#176;&#222;&#240;&#208;&#180;           > B0 DE F0 D0 B4 01 00 00 00 00 00 00 00 00 00 00 
{93} normal block at 0x000001B4D0F0DEB0, 40 bytes long.
 Data: <@ &#240;&#208;&#180;     &#241;&#208;&#180;   > 40 8F F0 D0 B4 01 00 00 10 07 F1 D0 B4 01 00 00 
{72} normal block at 0x000001B4D0F09030, 16 bytes long.
 Data: < &#234;&#148;U&#246;           > 80 EA 94 55 F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x000001B4D0F093A0, 16 bytes long.
 Data: <@&#233;&#148;U&#246;           > 40 E9 94 55 F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x000001B4D0F08C70, 16 bytes long.
 Data: <&#248;W&#145;U&#246;           > F8 57 91 55 F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000001B4D0F08810, 16 bytes long.
 Data: <&#216;W&#145;U&#246;           > D8 57 91 55 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000001B4D0F08DB0, 16 bytes long.
 Data: <P &#145;U&#246;           > 50 04 91 55 F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000001B4D0F08B80, 16 bytes long.
 Data: <0 &#145;U&#246;           > 30 04 91 55 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000001B4D0F08C20, 16 bytes long.
 Data: <&#224; &#145;U&#246;           > E0 02 91 55 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000001B4D0F08A90, 16 bytes long.
 Data: <  &#145;U&#246;           > 10 04 91 55 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000001B4D0F089A0, 16 bytes long.
 Data: <p &#145;U&#246;           > 70 04 91 55 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000001B4D0F08770, 16 bytes long.
 Data: < &#192; U&#246;           > 18 C0 8F 55 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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