Task 38668450

Name test_135-GPUGRID_TEST_ATM_40STEP_20261023-11-40-RND9945_1
Workunit 31610941
Created 25 Oct 2026, 11:49:29 UTC
Sent 25 Oct 2026, 11:49:33 UTC
Report deadline 30 Oct 2026, 11:49:33 UTC
Received 25 Oct 2026, 16:43:09 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 195 (0x000000C3) EXIT_CHILD_FAILED
Computer ID 649275
Run time 37 min 40 sec
CPU time 33 min 51 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 5,441.05 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 699.38 MB
Peak swap size 2.95 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
 (0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
07:42:20 (18944): wrapper (7.9.26016): starting
07:42:20 (18944): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
07:42:22 (18944): Library/usr/bin/tar.exe exited; CPU time 0.000000
07:42:22 (18944): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
08:41:07 (12512): wrapper (7.9.26016): starting
08:41:07 (12512): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\0\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
09:41:06 (2440): wrapper (7.9.26016): starting
09:41:06 (2440): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\0\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Traceback (most recent call last):
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\openmm_async_re.py", line 432, in __init__
    replica = OMMReplicaATM(i, self.basename, self.service_worker, self.logger, self.keywords)
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommreplica.py", line 41, in __init__
    self.load_checkpoint()
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommreplica.py", line 79, in load_checkpoint
    self.worker.simulation.loadState(ckptfile)
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\openmm\app\simulation.py", line 363, in loadState
    self.context.setState(mm.XmlSerializer.deserialize(xml))
                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\openmm\openmm.py", line 19618, in deserialize
    raise ValueError("Invalid input string")
ValueError: Invalid input string

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<frozen runpy>", line 198, in _run_module_as_main
  File "<frozen runpy>", line 88, in _run_code
  File "C:\ProgramData\BOINC\slots\0\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\rbfe_production.py", line 29, in rbfe_production
    rx = openmm_job_RBFE(
         ^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\openmm_async_re.py", line 434, in __init__
    self._exit("Error when creating replica.")
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\async_re.py", line 69, in _exit
    self.checkpointJob()
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\openmm_async_re.py", line 48, in checkpointJob
    self.update_state_of_replica(repl)
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\openmm_async_re.py", line 86, in update_state_of_replica
    stateid = self.status[repl]['stateid_current']
              ^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\async_re.py", line 131, in __getattribute__
    return object.__getattribute__(self,name)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: 'openmm_job_RBFE' object has no attribute 'status'
09:41:31 (2440): C:/Windows/system32/cmd.exe exited; CPU time 18.609375
09:41:31 (2440): app exit status: 0x16
09:41:31 (2440): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 393742 bytes.
Dumping objects ->
{1593} normal block at 0x00000249FF895F70, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1582} normal block at 0x00000249FF896280, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1571} normal block at 0x00000249FF895FE0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{1560} normal block at 0x00000249FF895E20, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1549} normal block at 0x00000249FF8960C0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{1518} normal block at 0x00000249FF87C1A0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {1505} normal block at 0x00000249FF894B80, 8 bytes long.
 Data: <    I   > 00 00 D3 FF 49 02 00 00 
{303} normal block at 0x00000249FF894540, 8 bytes long.
 Data: < d  I   > 90 64 89 FF 49 02 00 00 
{294} normal block at 0x00000249FF885E80, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{293} normal block at 0x00000249FF8953A0, 16 bytes long.
 Data: < [  I           > 88 5B 89 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x00000249FF895260, 16 bytes long.
 Data: <`[  I           > 60 5B 89 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x00000249FF88FD80, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{290} normal block at 0x00000249FF894770, 16 bytes long.
 Data: <8[  I           > 38 5B 89 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x00000249FF8947C0, 16 bytes long.
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{288} normal block at 0x00000249FF894BD0, 16 bytes long.
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{287} normal block at 0x00000249FF895210, 16 bytes long.
 Data: < Z  I           > C0 5A 89 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x00000249FF896050, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{285} normal block at 0x00000249FF895030, 16 bytes long.
 Data: <X@  I           > 58 40 89 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x00000249FF88F3C0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{283} normal block at 0x00000249FF894630, 16 bytes long.
 Data: <0@  I           > 30 40 89 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x00000249FF894FE0, 16 bytes long.
 Data: < @  I           > 08 40 89 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x00000249FF895120, 16 bytes long.
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{279} normal block at 0x00000249FF8946D0, 16 bytes long.
 Data: < ?  I           > B8 3F 89 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x00000249FF894AE0, 16 bytes long.
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{277} normal block at 0x00000249FF894810, 16 bytes long.
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{276} normal block at 0x00000249FF88FC60, 32 bytes long.
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{275} normal block at 0x00000249FF894A90, 16 bytes long.
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{274} normal block at 0x00000249FF893F40, 320 bytes long.
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{273} normal block at 0x00000249FF8952B0, 16 bytes long.
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{272} normal block at 0x00000249FF894680, 16 bytes long.
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{271} normal block at 0x00000249FF88FE40, 32 bytes long.
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{270} normal block at 0x00000249FF894A40, 16 bytes long.
 Data: <PZ  I           > 50 5A 89 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x00000249FF88F0C0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{268} normal block at 0x00000249FF8944A0, 16 bytes long.
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{267} normal block at 0x00000249FF894D10, 16 bytes long.
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{266} normal block at 0x00000249FF894720, 16 bytes long.
 Data: <HY  I           > 48 59 89 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x00000249FF8949F0, 16 bytes long.
 Data: < Y  I           > 20 59 89 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x00000249FF895300, 16 bytes long.
 Data: < X  I           > F8 58 89 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x00000249FF8951C0, 16 bytes long.
 Data: < X  I           > D0 58 89 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x00000249FF8944F0, 16 bytes long.
 Data: <0   I           > 30 C1 87 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x00000249FF87C130, 40 bytes long.
 Data: < D  I       I   > F0 44 89 FF 49 02 00 00 A0 C1 87 FF 49 02 00 00 
{259} normal block at 0x00000249FF894EA0, 16 bytes long.
 Data: < X  I           > B0 58 89 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x00000249FF894950, 16 bytes long.
 Data: < X  I           > 88 58 89 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x00000249FF88FC00, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{256} normal block at 0x00000249FF8949A0, 16 bytes long.
 Data: <`X  I           > 60 58 89 FF 49 02 00 00 00 00 00 00 00 00 00 00 
{255} normal block at 0x00000249FF895860, 992 bytes long.
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{91} normal block at 0x00000249FF88F120, 32 bytes long.
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{90} normal block at 0x00000249FF88E370, 16 bytes long.
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{89} normal block at 0x00000249FF88DEF0, 40 bytes long.
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{68} normal block at 0x00000249FF88E320, 16 bytes long.
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{67} normal block at 0x00000249FF88ECD0, 16 bytes long.
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{66} normal block at 0x00000249FF88EFA0, 16 bytes long.
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{65} normal block at 0x00000249FF88EAF0, 16 bytes long.
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{64} normal block at 0x00000249FF88E910, 16 bytes long.
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{63} normal block at 0x00000249FF88E9B0, 16 bytes long.
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{62} normal block at 0x00000249FF88E4B0, 16 bytes long.
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{61} normal block at 0x00000249FF88EE60, 16 bytes long.
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{60} normal block at 0x00000249FF88E1E0, 16 bytes long.
 Data: <p E}            > 70 04 45 7D F7 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x00000249FF88EC80, 16 bytes long.
 Data: <  C}            > 18 C0 43 7D F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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