Task 38667624

Name test_498-GPUGRID_TEST_ATM_40STEP_20261023-7-40-RND3850_2
Workunit 31608861
Created 25 Oct 2026, 8:45:23 UTC
Sent 25 Oct 2026, 8:45:34 UTC
Report deadline 30 Oct 2026, 8:45:34 UTC
Received 25 Oct 2026, 9:36:18 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 610527
Run time 49 min 30 sec
CPU time 41 min 34 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 12,741.16 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 698.50 MB
Peak swap size 8.37 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
03:47:32 (28680): wrapper (7.9.26016): starting
03:47:32 (28680): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
03:47:34 (28680): Library/usr/bin/tar.exe exited; CPU time 0.000000
03:47:34 (28680): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\19\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\19\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
04:35:38 (28680): C:/Windows/system32/cmd.exe exited; CPU time 2494.468750
04:35:38 (28680): called boinc_finish(0)
0 bytes in 0 Free Blocks.
766 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 51770243 bytes.
Dumping objects ->
{3835255} normal block at 0x0000022FCF8D4C90, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835244} normal block at 0x0000022FCF8D4D00, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835233} normal block at 0x0000022FCF8D4EC0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835222} normal block at 0x0000022FCF8D4E50, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835211} normal block at 0x0000022FCF8D4C20, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835180} normal block at 0x0000022FD15585F0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835169} normal block at 0x0000022FCF8C6230, 255 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835166} normal block at 0x0000022FCF8D0640, 8 bytes long.
 Data: <   &#207;/   > 00 00 88 CF 2F 02 00 00 
{3834567} normal block at 0x0000022FCF8C60F0, 255 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833963} normal block at 0x0000022FCF8D05A0, 8 bytes long.
 Data: <&#176;&#227;F&#209;/   > B0 E3 46 D1 2F 02 00 00 
..\zip\boinc_zip.cpp(122) : {313} normal block at 0x0000022FCF8C6AF0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x0000022FCF8C7200, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{297} normal block at 0x0000022FCF8D5C30, 16 bytes long.
 Data: < g &#207;/           > 98 67 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x0000022FCF8D5690, 16 bytes long.
 Data: <pg &#207;/           > 70 67 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x0000022FCF8D11C0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{294} normal block at 0x0000022FCF8D55F0, 16 bytes long.
 Data: <Hg &#207;/           > 48 67 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x0000022FCF8D6400, 16 bytes long.
 Data: < g &#207;/           > 20 67 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000022FCF8D5820, 16 bytes long.
 Data: <&#248;f &#207;/           > F8 66 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000022FCF8D5870, 16 bytes long.
 Data: <&#208;f &#207;/           > D0 66 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000022FCF8D4B40, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{289} normal block at 0x0000022FCF8D6220, 16 bytes long.
 Data: <h&#248;&#140;&#207;/           > 68 F8 8C CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x0000022FCF8D0A40, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{287} normal block at 0x0000022FCF8D5F50, 16 bytes long.
 Data: <@&#248;&#140;&#207;/           > 40 F8 8C CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000022FCF8D5DC0, 16 bytes long.
 Data: < &#248;&#140;&#207;/           > 18 F8 8C CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000022FCF8D5A50, 16 bytes long.
 Data: <&#240;&#247;&#140;&#207;/           > F0 F7 8C CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000022FCF8D6270, 16 bytes long.
 Data: <&#200;&#247;&#140;&#207;/           > C8 F7 8C CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000022FCF8D5D70, 16 bytes long.
 Data: <&#160;&#247;&#140;&#207;/           > A0 F7 8C CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000022FCF8D5640, 16 bytes long.
 Data: <x&#247;&#140;&#207;/           > 78 F7 8C CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000022FCF8D0D40, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{279} normal block at 0x0000022FCF8D5500, 16 bytes long.
 Data: <P&#247;&#140;&#207;/           > 50 F7 8C CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000022FCF8CF750, 320 bytes long.
 Data: < U &#207;/   @  &#207;/   > 00 55 8D CF 2F 02 00 00 40 0D 8D CF 2F 02 00 00 
{277} normal block at 0x0000022FCF8D5BE0, 16 bytes long.
 Data: <&#176;f &#207;/           > B0 66 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000022FCF8D5F00, 16 bytes long.
 Data: < f &#207;/           > 88 66 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000022FCF8D09E0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{274} normal block at 0x0000022FCF8D5A00, 16 bytes long.
 Data: <`f &#207;/           > 60 66 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x0000022FCF8D0980, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{272} normal block at 0x0000022FCF8D5EB0, 16 bytes long.
 Data: <&#168;e &#207;/           > A8 65 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x0000022FCF8D5D20, 16 bytes long.
 Data: < e &#207;/           > 80 65 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000022FCF8D5730, 16 bytes long.
 Data: <Xe &#207;/           > 58 65 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x0000022FCF8D5960, 16 bytes long.
 Data: <0e &#207;/           > 30 65 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000022FCF8D6310, 16 bytes long.
 Data: < e &#207;/           > 08 65 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000022FCF8D60E0, 16 bytes long.
 Data: <&#224;d &#207;/           > E0 64 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000022FCF8D6180, 16 bytes long.
 Data: < I &#207;/           > 80 49 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000022FCF8D4980, 40 bytes long.
 Data: < a &#207;/   &#240;&#133;U&#209;/   > 80 61 8D CF 2F 02 00 00 F0 85 55 D1 2F 02 00 00 
{263} normal block at 0x0000022FCF8D56E0, 16 bytes long.
 Data: <&#192;d &#207;/           > C0 64 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000022FCF8D5910, 16 bytes long.
 Data: < d &#207;/           > 98 64 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x0000022FCF8D1760, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{260} normal block at 0x0000022FCF8D6090, 16 bytes long.
 Data: <pd &#207;/           > 70 64 8D CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x0000022FCF8D6470, 992 bytes long.
 Data: < ` &#207;/   `  &#207;/   > 90 60 8D CF 2F 02 00 00 60 17 8D CF 2F 02 00 00 
{95} normal block at 0x0000022FCF8D1880, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{94} normal block at 0x0000022FCF8CF970, 16 bytes long.
 Data: <0&#215;&#139;&#207;/           > 30 D7 8B CF 2F 02 00 00 00 00 00 00 00 00 00 00 
{93} normal block at 0x0000022FCF8BD730, 40 bytes long.
 Data: <p&#249;&#140;&#207;/      &#207;/   > 70 F9 8C CF 2F 02 00 00 80 18 8D CF 2F 02 00 00 
{72} normal block at 0x0000022FCF8CFFB0, 16 bytes long.
 Data: < &#234;A &#246;           > 80 EA 41 7F F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x0000022FCF8CFE70, 16 bytes long.
 Data: <@&#233;A &#246;           > 40 E9 41 7F F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x0000022FCF8D0780, 16 bytes long.
 Data: <&#248;W> &#246;           > F8 57 3E 7F F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x0000022FCF8D08C0, 16 bytes long.
 Data: <&#216;W> &#246;           > D8 57 3E 7F F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x0000022FCF8D07D0, 16 bytes long.
 Data: <P > &#246;           > 50 04 3E 7F F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x0000022FCF8D06E0, 16 bytes long.
 Data: <0 > &#246;           > 30 04 3E 7F F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000022FCF8CFD80, 16 bytes long.
 Data: <&#224; > &#246;           > E0 02 3E 7F F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000022FCF8CFAB0, 16 bytes long.
 Data: <  > &#246;           > 10 04 3E 7F F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000022FCF8D0870, 16 bytes long.
 Data: <p > &#246;           > 70 04 3E 7F F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000022FCF8CFB00, 16 bytes long.
 Data: < &#192;< &#246;           > 18 C0 3C 7F F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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