Task 38667050

Name test_239-GPUGRID_TEST_ATM_40STEP_20261023-11-40-RND1424_0
Workunit 31609743
Created 25 Oct 2026, 6:05:47 UTC
Sent 25 Oct 2026, 6:05:48 UTC
Report deadline 30 Oct 2026, 6:05:48 UTC
Received 25 Oct 2026, 6:36:08 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 613450
Run time 27 min 13 sec
CPU time 25 min 35 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 16,492.58 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 744.63 MB
Peak swap size 9.94 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:07:42 (4564): wrapper (7.9.26016): starting
00:07:42 (4564): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
00:07:43 (4564): Library/usr/bin/tar.exe exited; CPU time 0.000000
00:07:43 (4564): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'E:\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'E:\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
00:34:14 (4564): C:/Windows/system32/cmd.exe exited; CPU time 1535.187500
00:34:14 (4564): called boinc_finish(0)
0 bytes in 0 Free Blocks.
176 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 28130389 bytes.
Dumping objects ->
{3835435} normal block at 0x0000028D464C55D0, 48 bytes long.
 Data: <PATH=E:\BOINC\sl> 50 41 54 48 3D 45 3A 5C 42 4F 49 4E 43 5C 73 6C 
{3835424} normal block at 0x0000028D48381BC0, 32 bytes long.
 Data: <HOME=E:\BOINC\sl> 48 4F 4D 45 3D 45 3A 5C 42 4F 49 4E 43 5C 73 6C 
{3835413} normal block at 0x0000028D483818C0, 32 bytes long.
 Data: <TMP=E:\BOINC\slo> 54 4D 50 3D 45 3A 5C 42 4F 49 4E 43 5C 73 6C 6F 
{3835402} normal block at 0x0000028D48382BE0, 32 bytes long.
 Data: <TEMP=E:\BOINC\sl> 54 45 4D 50 3D 45 3A 5C 42 4F 49 4E 43 5C 73 6C 
{3835391} normal block at 0x0000028D48381860, 32 bytes long.
 Data: <TMPDIR=E:\BOINC\> 54 4D 50 44 49 52 3D 45 3A 5C 42 4F 49 4E 43 5C 
{3835360} normal block at 0x0000028D464C5250, 48 bytes long.
 Data: <PATH=E:\BOINC\sl> 50 41 54 48 3D 45 3A 5C 42 4F 49 4E 43 5C 73 6C 
..\api\boinc_api.cpp(309) : {3835347} normal block at 0x0000028D464BE460, 8 bytes long.
 Data: <  &#154;F    > 00 00 9A 46 8D 02 00 00 
{3833963} normal block at 0x0000028D464BD790, 8 bytes long.
 Data: <P&#219;JF    > 50 DB 4A 46 8D 02 00 00 
..\zip\boinc_zip.cpp(122) : {313} normal block at 0x0000028D464B0F40, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x0000028D464B1F10, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{297} normal block at 0x0000028D464C69C0, 16 bytes long.
 Data: < oLF            > 88 6F 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x0000028D464C6970, 16 bytes long.
 Data: <`oLF            > 60 6F 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x0000028D464C0460, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{294} normal block at 0x0000028D464C6880, 16 bytes long.
 Data: <8oLF            > 38 6F 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x0000028D464C6600, 16 bytes long.
 Data: < oLF            > 10 6F 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000028D464C64C0, 16 bytes long.
 Data: <&#232;nLF            > E8 6E 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000028D464C6470, 16 bytes long.
 Data: <&#192;nLF            > C0 6E 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000028D464C56B0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{289} normal block at 0x0000028D464C6920, 16 bytes long.
 Data: < &#185;JF            > 08 B9 4A 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x0000028D464BFE60, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{287} normal block at 0x0000028D464C5E80, 16 bytes long.
 Data: <&#224;&#184;JF            > E0 B8 4A 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000028D464C6560, 16 bytes long.
 Data: <&#184;&#184;JF            > B8 B8 4A 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000028D464C5D90, 16 bytes long.
 Data: < &#184;JF            > 90 B8 4A 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000028D464C6830, 16 bytes long.
 Data: <h&#184;JF            > 68 B8 4A 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000028D464C66F0, 16 bytes long.
 Data: <@&#184;JF            > 40 B8 4A 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000028D464C62E0, 16 bytes long.
 Data: < &#184;JF            > 18 B8 4A 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000028D464C0160, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{279} normal block at 0x0000028D464C66A0, 16 bytes long.
 Data: <&#240;&#183;JF            > F0 B7 4A 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000028D464AB7F0, 320 bytes long.
 Data: <&#160;fLF    ` LF    > A0 66 4C 46 8D 02 00 00 60 01 4C 46 8D 02 00 00 
{277} normal block at 0x0000028D464C6650, 16 bytes long.
 Data: <&#160;nLF            > A0 6E 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000028D464C65B0, 16 bytes long.
 Data: <xnLF            > 78 6E 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000028D464C06A0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{274} normal block at 0x0000028D464C63D0, 16 bytes long.
 Data: <PnLF            > 50 6E 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x0000028D464BFFE0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{272} normal block at 0x0000028D464C6290, 16 bytes long.
 Data: < mLF            > 98 6D 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x0000028D464C6510, 16 bytes long.
 Data: <pmLF            > 70 6D 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000028D464C6380, 16 bytes long.
 Data: <HmLF            > 48 6D 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x0000028D464C61A0, 16 bytes long.
 Data: < mLF            > 20 6D 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000028D464C6AB0, 16 bytes long.
 Data: <&#248;lLF            > F8 6C 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000028D464C6B50, 16 bytes long.
 Data: <&#208;lLF            > D0 6C 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000028D464C6A60, 16 bytes long.
 Data: < TLF            > 10 54 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000028D464C5410, 40 bytes long.
 Data: <`jLF    PRLF    > 60 6A 4C 46 8D 02 00 00 50 52 4C 46 8D 02 00 00 
{263} normal block at 0x0000028D464C6060, 16 bytes long.
 Data: <&#176;lLF            > B0 6C 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000028D464C6740, 16 bytes long.
 Data: < lLF            > 88 6C 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x0000028D464C0400, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{260} normal block at 0x0000028D464C67E0, 16 bytes long.
 Data: <`lLF            > 60 6C 4C 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x0000028D464C6C60, 992 bytes long.
 Data: <&#224;gLF      LF    > E0 67 4C 46 8D 02 00 00 00 04 4C 46 8D 02 00 00 
{95} normal block at 0x0000028D464BFAA0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{94} normal block at 0x0000028D464BDFB0, 16 bytes long.
 Data: <@&#227;JF            > 40 E3 4A 46 8D 02 00 00 00 00 00 00 00 00 00 00 
{93} normal block at 0x0000028D464AE340, 40 bytes long.
 Data: <&#176;&#223;KF    &#160;&#250;KF    > B0 DF 4B 46 8D 02 00 00 A0 FA 4B 46 8D 02 00 00 
{72} normal block at 0x0000028D464BDBF0, 16 bytes long.
 Data: < &#234;%c&#246;           > 80 EA 25 63 F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x0000028D464BD6A0, 16 bytes long.
 Data: <@&#233;%c&#246;           > 40 E9 25 63 F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x0000028D464BD650, 16 bytes long.
 Data: <&#248;W"c&#246;           > F8 57 22 63 F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x0000028D464BD970, 16 bytes long.
 Data: <&#216;W"c&#246;           > D8 57 22 63 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x0000028D464BE410, 16 bytes long.
 Data: <P "c&#246;           > 50 04 22 63 F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x0000028D464BDC40, 16 bytes long.
 Data: <0 "c&#246;           > 30 04 22 63 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000028D464BDA60, 16 bytes long.
 Data: <&#224; "c&#246;           > E0 02 22 63 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000028D464BE0F0, 16 bytes long.
 Data: <  "c&#246;           > 10 04 22 63 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000028D464BE1E0, 16 bytes long.
 Data: <p "c&#246;           > 70 04 22 63 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000028D464BE140, 16 bytes long.
 Data: < &#192; c&#246;           > 18 C0 20 63 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


©2026 Universitat Pompeu Fabra