Task 38662824

Name test_52-GPUGRID_TEST_ATM_40STEP_20261023-10-40-RND8299_0
Workunit 31606059
Created 24 Oct 2026, 20:54:06 UTC
Sent 24 Oct 2026, 20:54:08 UTC
Report deadline 29 Oct 2026, 20:54:08 UTC
Received 25 Oct 2026, 1:13:57 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 195 (0x000000C3) EXIT_CHILD_FAILED
Computer ID 400693
Run time 1 hours 9 min 17 sec
CPU time 1 hours 2 min 8 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 4,172.19 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 641.86 MB
Peak swap size 3.70 GB
Peak disk usage 3.90 GB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<message>
(unknown error) (0) - exit code 195 (0xc3)</message>
<stderr_txt>
02:08:06 (4732): wrapper (7.9.26016): starting
02:08:06 (4732): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
02:08:09 (4732): Library/usr/bin/tar.exe exited; CPU time 0.000000
02:08:09 (4732): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\15\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\15\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Traceback (most recent call last):
  File "<frozen runpy>", line 198, in _run_module_as_main
  File "<frozen runpy>", line 88, in _run_code
  File "C:\ProgramData\BOINC\slots\15\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
  File "C:\ProgramData\BOINC\slots\15\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
    rx.scheduleJobs()
  File "C:\ProgramData\BOINC\slots\15\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
    self.transport.ProcessJobQueue(min_time,cycle_time)
  File "C:\ProgramData\BOINC\slots\15\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
    self.isDone(repl,0)
  File "C:\ProgramData\BOINC\slots\15\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
    retcode = self._update_replica(job)
              ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\15\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
    pot = job['openmm_worker'].get_energy()
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\15\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
    return self._worker_getenergy()
           ^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\15\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
    state = self.simulation.context.getState(getEnergy = True)
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\15\Lib\site-packages\openmm\openmm.py", line 5022, in getState
    state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN.  For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
02:13:29 (4732): C:/Windows/system32/cmd.exe exited; CPU time 3728.937500
02:13:29 (4732): app exit status: 0x16
02:13:29 (4732): called boinc_finish(195)
0 bytes in 0 Free Blocks.
546 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 43756239 bytes.
Dumping objects ->
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{3835110} normal block at 0x000001F37CE812F0, 48 bytes long.
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{3835099} normal block at 0x000001F37CE81830, 48 bytes long.
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{3835088} normal block at 0x000001F37CE81210, 48 bytes long.
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{3835057} normal block at 0x000001F37D075FE0, 64 bytes long.
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{3835046} normal block at 0x000001F37B55EE90, 145 bytes long.
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..\api\boinc_api.cpp(309) : {3835043} normal block at 0x000001F37B507350, 8 bytes long.
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{3834495} normal block at 0x000001F37B55E9B0, 145 bytes long.
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{3833955} normal block at 0x000001F37B5070D0, 8 bytes long.
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{284} normal block at 0x000001F37B50CB70, 32 bytes long.
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{283} normal block at 0x000001F37B512F00, 16 bytes long.
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{281} normal block at 0x000001F37B513360, 16 bytes long.
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{276} normal block at 0x000001F37B50BEB0, 32 bytes long.
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{273} normal block at 0x000001F37B513540, 16 bytes long.
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{272} normal block at 0x000001F37B5139F0, 16 bytes long.
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{261} normal block at 0x000001F37B512DC0, 16 bytes long.
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{259} normal block at 0x000001F37B5134A0, 16 bytes long.
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{258} normal block at 0x000001F37B512FF0, 16 bytes long.
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{257} normal block at 0x000001F37B50CAB0, 32 bytes long.
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{256} normal block at 0x000001F37B5131D0, 16 bytes long.
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{91} normal block at 0x000001F37B50C6F0, 32 bytes long.
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{90} normal block at 0x000001F37B5073A0, 16 bytes long.
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{68} normal block at 0x000001F37B507990, 16 bytes long.
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{67} normal block at 0x000001F37B507D50, 16 bytes long.
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{66} normal block at 0x000001F37B507080, 16 bytes long.
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{65} normal block at 0x000001F37B507800, 16 bytes long.
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{64} normal block at 0x000001F37B507760, 16 bytes long.
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{63} normal block at 0x000001F37B5077B0, 16 bytes long.
 Data: <0 Gd&#247;           > 30 04 47 64 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000001F37B5073F0, 16 bytes long.
 Data: <&#224; Gd&#247;           > E0 02 47 64 F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000001F37B507D00, 16 bytes long.
 Data: <  Gd&#247;           > 10 04 47 64 F7 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x000001F37B507710, 16 bytes long.
 Data: <p Gd&#247;           > 70 04 47 64 F7 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x000001F37B507CB0, 16 bytes long.
 Data: < &#192;Ed&#247;           > 18 C0 45 64 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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