Task 38662200

Name test_1880-GPUGRID_TEST_ATM_2STEP_20261024-1-2-RND2441_0
Workunit 31605470
Created 24 Oct 2026, 18:21:31 UTC
Sent 24 Oct 2026, 18:21:38 UTC
Report deadline 29 Oct 2026, 18:21:38 UTC
Received 26 Oct 2026, 7:35:41 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 195 (0x000000C3) EXIT_CHILD_FAILED
Computer ID 654071
Run time 3 min 22 sec
CPU time 18 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 2,933.51 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 334.65 MB
Peak swap size 1.67 GB
Peak disk usage 1.49 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<message>
System operacyjny nie mo�e uruchomi� (null).
 (0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
08:32:56 (4104): wrapper (7.9.26016): starting
08:32:56 (4104): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
08:33:01 (4104): Library/usr/bin/tar.exe exited; CPU time 0.000000
08:33:01 (4104): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\7\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\7\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.

bzip2: Data integrity error when decompressing.
	Input file = (stdin), output file = (stdout)

It is possible that the compressed file(s) have become corrupted.
You can use the -tvv option to test integrity of such files.

You can use the `bzip2recover' program to attempt to recover
data from undamaged sections of corrupted files.

tar: Unexpected EOF in archive
tar: Unexpected EOF in archive
tar: Error is not recoverable: exiting now
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Traceback (most recent call last):
  File "C:\ProgramData\BOINC\slots\7\Lib\site-packages\atom_openmm\openmm_async_re.py", line 432, in __init__
    replica = OMMReplicaATM(i, self.basename, self.service_worker, self.logger, self.keywords)
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\7\Lib\site-packages\atom_openmm\ommreplica.py", line 41, in __init__
    self.load_checkpoint()
  File "C:\ProgramData\BOINC\slots\7\Lib\site-packages\atom_openmm\ommreplica.py", line 79, in load_checkpoint
    self.worker.simulation.loadState(ckptfile)
  File "C:\ProgramData\BOINC\slots\7\Lib\site-packages\openmm\app\simulation.py", line 363, in loadState
    self.context.setState(mm.XmlSerializer.deserialize(xml))
                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\7\Lib\site-packages\openmm\openmm.py", line 19627, in deserialize
    return XmlSerializer._deserializeState(inputString)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\7\Lib\site-packages\openmm\openmm.py", line 19590, in _deserializeState
    return _openmm.XmlSerializer__deserializeState(inputString)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Unknown property 'z' in node '
		'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<frozen runpy>", line 198, in _run_module_as_main
  File "<frozen runpy>", line 88, in _run_code
  File "C:\ProgramData\BOINC\slots\7\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
  File "C:\ProgramData\BOINC\slots\7\Lib\site-packages\atom_openmm\rbfe_production.py", line 29, in rbfe_production
    rx = openmm_job_RBFE(
         ^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\7\Lib\site-packages\atom_openmm\openmm_async_re.py", line 434, in __init__
    self._exit("Error when creating replica.")
  File "C:\ProgramData\BOINC\slots\7\Lib\site-packages\atom_openmm\async_re.py", line 69, in _exit
    self.checkpointJob()
  File "C:\ProgramData\BOINC\slots\7\Lib\site-packages\atom_openmm\openmm_async_re.py", line 48, in checkpointJob
    self.update_state_of_replica(repl)
  File "C:\ProgramData\BOINC\slots\7\Lib\site-packages\atom_openmm\openmm_async_re.py", line 86, in update_state_of_replica
    stateid = self.status[repl]['stateid_current']
              ^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\7\Lib\site-packages\atom_openmm\async_re.py", line 131, in __getattribute__
    return object.__getattribute__(self,name)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: 'openmm_job_RBFE' object has no attribute 'status'
08:33:47 (4104): C:/Windows/system32/cmd.exe exited; CPU time 18.187500
08:33:47 (4104): app exit status: 0x16
08:33:47 (4104): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 865601 bytes.
Dumping objects ->
{3835240} normal block at 0x0000023F62C871E0, 48 bytes long.
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{3835229} normal block at 0x0000023F62C87720, 48 bytes long.
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{3835218} normal block at 0x0000023F62C87250, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835207} normal block at 0x0000023F62C87020, 48 bytes long.
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{3835196} normal block at 0x0000023F62C86E60, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835165} normal block at 0x0000023F64845600, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835151} normal block at 0x0000023F62C577F0, 8 bytes long.
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{3833945} normal block at 0x0000023F62C57390, 8 bytes long.
 Data: < :&#141;d?   > 80 3A 8D 64 3F 02 00 00 
..\zip\boinc_zip.cpp(122) : {304} normal block at 0x0000023F62C626F0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x0000023F62C4DB80, 80 bytes long.
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{288} normal block at 0x0000023F62C644F0, 16 bytes long.
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{287} normal block at 0x0000023F62C636E0, 16 bytes long.
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{286} normal block at 0x0000023F62C5BB70, 32 bytes long.
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{285} normal block at 0x0000023F62C64450, 16 bytes long.
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{284} normal block at 0x0000023F62C63F50, 16 bytes long.
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{283} normal block at 0x0000023F62C64310, 16 bytes long.
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{282} normal block at 0x0000023F62C63CD0, 16 bytes long.
 Data: < J&#198;b?           > 10 4A C6 62 3F 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000023F62C5DF90, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{280} normal block at 0x0000023F62C64090, 16 bytes long.
 Data: < a&#196;b?           > 18 61 C4 62 3F 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000023F62C5C290, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{278} normal block at 0x0000023F62C643B0, 16 bytes long.
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{276} normal block at 0x0000023F62C63DC0, 16 bytes long.
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{275} normal block at 0x0000023F62C63AA0, 16 bytes long.
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{274} normal block at 0x0000023F62C63820, 16 bytes long.
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{273} normal block at 0x0000023F62C63F00, 16 bytes long.
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{272} normal block at 0x0000023F62C63870, 16 bytes long.
 Data: <(`&#196;b?           > 28 60 C4 62 3F 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x0000023F62C5C4D0, 32 bytes long.
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{270} normal block at 0x0000023F62C64220, 16 bytes long.
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{269} normal block at 0x0000023F62C46000, 320 bytes long.
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{268} normal block at 0x0000023F62C63BE0, 16 bytes long.
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{267} normal block at 0x0000023F62C641D0, 16 bytes long.
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{266} normal block at 0x0000023F62C5C6B0, 32 bytes long.
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{265} normal block at 0x0000023F62C642C0, 16 bytes long.
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{264} normal block at 0x0000023F62C5B990, 32 bytes long.
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{263} normal block at 0x0000023F62C64540, 16 bytes long.
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{262} normal block at 0x0000023F62C64180, 16 bytes long.
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{261} normal block at 0x0000023F62C64590, 16 bytes long.
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{260} normal block at 0x0000023F62C63E10, 16 bytes long.
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{259} normal block at 0x0000023F62C64040, 16 bytes long.
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{258} normal block at 0x0000023F62C64130, 16 bytes long.
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{256} normal block at 0x0000023F62C64360, 16 bytes long.
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{255} normal block at 0x0000023F62C5E000, 40 bytes long.
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{254} normal block at 0x0000023F62C644A0, 16 bytes long.
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{253} normal block at 0x0000023F62C63EB0, 16 bytes long.
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{252} normal block at 0x0000023F62C5C2F0, 32 bytes long.
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{251} normal block at 0x0000023F62C640E0, 16 bytes long.
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{250} normal block at 0x0000023F62C647B0, 992 bytes long.
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{86} normal block at 0x0000023F62C5C170, 32 bytes long.
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{85} normal block at 0x0000023F62C577A0, 16 bytes long.
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{84} normal block at 0x0000023F62C5DCF0, 40 bytes long.
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{63} normal block at 0x0000023F62C56C10, 16 bytes long.
 Data: < &#234;&#167;&#202;&#247;           > 80 EA A7 CA F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x0000023F62C57110, 16 bytes long.
 Data: <@&#233;&#167;&#202;&#247;           > 40 E9 A7 CA F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x0000023F62C56F30, 16 bytes long.
 Data: <&#248;W&#164;&#202;&#247;           > F8 57 A4 CA F7 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x0000023F62C57340, 16 bytes long.
 Data: <&#216;W&#164;&#202;&#247;           > D8 57 A4 CA F7 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x0000023F62C56EE0, 16 bytes long.
 Data: <P &#164;&#202;&#247;           > 50 04 A4 CA F7 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x0000023F62C56F80, 16 bytes long.
 Data: <0 &#164;&#202;&#247;           > 30 04 A4 CA F7 7F 00 00 00 00 00 00 00 00 00 00 
{57} normal block at 0x0000023F62C574D0, 16 bytes long.
 Data: <&#224; &#164;&#202;&#247;           > E0 02 A4 CA F7 7F 00 00 00 00 00 00 00 00 00 00 
{56} normal block at 0x0000023F62C576B0, 16 bytes long.
 Data: <  &#164;&#202;&#247;           > 10 04 A4 CA F7 7F 00 00 00 00 00 00 00 00 00 00 
{55} normal block at 0x0000023F62C572F0, 16 bytes long.
 Data: <p &#164;&#202;&#247;           > 70 04 A4 CA F7 7F 00 00 00 00 00 00 00 00 00 00 
{54} normal block at 0x0000023F62C56E90, 16 bytes long.
 Data: < &#192; &#202;&#247;           > 18 C0 A2 CA F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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