Task 38661439

Name test_997-GPUGRID_TEST_ATM_40STEP_20261023-5-40-RND0912_0
Workunit 31604855
Created 24 Oct 2026, 15:46:11 UTC
Sent 24 Oct 2026, 15:50:41 UTC
Report deadline 29 Oct 2026, 15:50:41 UTC
Received 24 Oct 2026, 16:09:40 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 652400
Run time 17 min 31 sec
CPU time 16 min 7 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 44,481.07 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 737.05 MB
Peak swap size 8.50 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
17:52:00 (20408): wrapper (7.9.26016): starting
17:52:00 (20408): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
17:52:01 (20408): Library/usr/bin/tar.exe exited; CPU time 0.000000
17:52:01 (20408): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
18:08:51 (20408): C:/Windows/system32/cmd.exe exited; CPU time 967.593750
18:08:51 (20408): called boinc_finish(0)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 18290257 bytes.
Dumping objects ->
{3835229} normal block at 0x000001BADD994340, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835218} normal block at 0x000001BADD9940A0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835207} normal block at 0x000001BADD993E70, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835196} normal block at 0x000001BADD994260, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835185} normal block at 0x000001BADD993E00, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835154} normal block at 0x000001BADF70B460, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835143} normal block at 0x000001BADF76C510, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835140} normal block at 0x000001BADD98D770, 8 bytes long.
 Data: <  S&#223;&#186;   > 00 00 53 DF BA 01 00 00 
{3834544} normal block at 0x000001BADF76C460, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833959} normal block at 0x000001BADD98D450, 8 bytes long.
 Data: <  {&#223;&#186;   > 80 0E 7B DF BA 01 00 00 
..\zip\boinc_zip.cpp(122) : {311} normal block at 0x000001BADD98EB10, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x000001BADD97EB30, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{295} normal block at 0x000001BADD993450, 16 bytes long.
 Data: <H< &#221;&#186;           > 48 3C 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x000001BADD9933B0, 16 bytes long.
 Data: < < &#221;&#186;           > 20 3C 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000001BADD98DFA0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{292} normal block at 0x000001BADD9929B0, 16 bytes long.
 Data: <&#248;; &#221;&#186;           > F8 3B 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x000001BADD993360, 16 bytes long.
 Data: <&#208;; &#221;&#186;           > D0 3B 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000001BADD992DC0, 16 bytes long.
 Data: <&#168;; &#221;&#186;           > A8 3B 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000001BADD993310, 16 bytes long.
 Data: < ; &#221;&#186;           > 80 3B 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000001BADD994030, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{287} normal block at 0x000001BADD993270, 16 bytes long.
 Data: <&#200;  &#221;&#186;           > C8 8F 98 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000001BADD98E660, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{285} normal block at 0x000001BADD993630, 16 bytes long.
 Data: <&#160;  &#221;&#186;           > A0 8F 98 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000001BADD992D70, 16 bytes long.
 Data: <x  &#221;&#186;           > 78 8F 98 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000001BADD993220, 16 bytes long.
 Data: <P  &#221;&#186;           > 50 8F 98 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000001BADD992A00, 16 bytes long.
 Data: <(  &#221;&#186;           > 28 8F 98 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001BADD992EB0, 16 bytes long.
 Data: <   &#221;&#186;           > 00 8F 98 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000001BADD9931D0, 16 bytes long.
 Data: <&#216;&#142; &#221;&#186;           > D8 8E 98 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000001BADD98D940, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{277} normal block at 0x000001BADD9930E0, 16 bytes long.
 Data: <&#176;&#142; &#221;&#186;           > B0 8E 98 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000001BADD988EB0, 320 bytes long.
 Data: <&#224;0 &#221;&#186;   @&#217; &#221;&#186;   > E0 30 99 DD BA 01 00 00 40 D9 98 DD BA 01 00 00 
{275} normal block at 0x000001BADD993040, 16 bytes long.
 Data: <`; &#221;&#186;           > 60 3B 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x000001BADD993680, 16 bytes long.
 Data: <8; &#221;&#186;           > 38 3B 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000001BADD98DA00, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{272} normal block at 0x000001BADD9935E0, 16 bytes long.
 Data: < ; &#221;&#186;           > 10 3B 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000001BADD98D880, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{270} normal block at 0x000001BADD993180, 16 bytes long.
 Data: <X: &#221;&#186;           > 58 3A 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000001BADD993130, 16 bytes long.
 Data: <0: &#221;&#186;           > 30 3A 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000001BADD992FF0, 16 bytes long.
 Data: < : &#221;&#186;           > 08 3A 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000001BADD9932C0, 16 bytes long.
 Data: <&#224;9 &#221;&#186;           > E0 39 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000001BADD992C80, 16 bytes long.
 Data: <&#184;9 &#221;&#186;           > B8 39 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000001BADD992E60, 16 bytes long.
 Data: < 9 &#221;&#186;           > 90 39 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x000001BADD992F00, 16 bytes long.
 Data: <&#240;&#227;&#151;&#221;&#186;           > F0 E3 97 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000001BADD97E3F0, 40 bytes long.
 Data: < / &#221;&#186;   `&#180;p&#223;&#186;   > 00 2F 99 DD BA 01 00 00 60 B4 70 DF BA 01 00 00 
{261} normal block at 0x000001BADD993590, 16 bytes long.
 Data: <p9 &#221;&#186;           > 70 39 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x000001BADD992AA0, 16 bytes long.
 Data: <H9 &#221;&#186;           > 48 39 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000001BADD98DB20, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{258} normal block at 0x000001BADD993090, 16 bytes long.
 Data: < 9 &#221;&#186;           > 20 39 99 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x000001BADD993920, 992 bytes long.
 Data: < 0 &#221;&#186;    &#219; &#221;&#186;   > 90 30 99 DD BA 01 00 00 20 DB 98 DD BA 01 00 00 
{93} normal block at 0x000001BADD98D9A0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{92} normal block at 0x000001BADD98C9B0, 16 bytes long.
 Data: <&#208;&#198;&#151;&#221;&#186;           > D0 C6 97 DD BA 01 00 00 00 00 00 00 00 00 00 00 
{91} normal block at 0x000001BADD97C6D0, 40 bytes long.
 Data: <&#176;&#201; &#221;&#186;   &#160;&#217; &#221;&#186;   > B0 C9 98 DD BA 01 00 00 A0 D9 98 DD BA 01 00 00 
{70} normal block at 0x000001BADD98D5E0, 16 bytes long.
 Data: < &#234;&#205;k&#247;           > 80 EA CD 6B F7 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000001BADD98D270, 16 bytes long.
 Data: <@&#233;&#205;k&#247;           > 40 E9 CD 6B F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000001BADD98CDC0, 16 bytes long.
 Data: <&#248;W&#202;k&#247;           > F8 57 CA 6B F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000001BADD98D4A0, 16 bytes long.
 Data: <&#216;W&#202;k&#247;           > D8 57 CA 6B F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000001BADD98D3B0, 16 bytes long.
 Data: <P &#202;k&#247;           > 50 04 CA 6B F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000001BADD98C870, 16 bytes long.
 Data: <0 &#202;k&#247;           > 30 04 CA 6B F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000001BADD98C960, 16 bytes long.
 Data: <&#224; &#202;k&#247;           > E0 02 CA 6B F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000001BADD98D310, 16 bytes long.
 Data: <  &#202;k&#247;           > 10 04 CA 6B F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000001BADD98D720, 16 bytes long.
 Data: <p &#202;k&#247;           > 70 04 CA 6B F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000001BADD98D590, 16 bytes long.
 Data: < &#192;&#200;k&#247;           > 18 C0 C8 6B F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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