Task 38660757

Name test_560-GPUGRID_TEST_ATM_40STEP_20261023-7-40-RND3916_0
Workunit 31604229
Created 24 Oct 2026, 14:41:37 UTC
Sent 24 Oct 2026, 14:46:22 UTC
Report deadline 29 Oct 2026, 14:46:22 UTC
Received 24 Oct 2026, 21:23:24 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 653804
Run time 39 min 42 sec
CPU time 38 min 28 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 13,171.24 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 693.88 MB
Peak swap size 5.35 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
11:39:48 (23324): wrapper (7.9.26016): starting
11:39:48 (23324): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
11:39:49 (23324): Library/usr/bin/tar.exe exited; CPU time 0.000000
11:39:49 (23324): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
12:19:34 (23324): C:/Windows/system32/cmd.exe exited; CPU time 2308.468750
12:19:34 (23324): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 50059449 bytes.
Dumping objects ->
{3835276} normal block at 0x000001BF604659E0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835265} normal block at 0x000001BF60465A50, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835254} normal block at 0x000001BF604656D0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835243} normal block at 0x000001BF5E7054B0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835232} normal block at 0x000001BF5E705280, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835201} normal block at 0x000001BF604052B0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835188} normal block at 0x000001BF5E6FE210, 8 bytes long.
 Data: <  &#211;^&#191;   > 00 00 D3 5E BF 01 00 00 
{3833963} normal block at 0x000001BF5E6FE4E0, 8 bytes long.
 Data: < &#230;}^&#191;   > 10 E6 7D 5E BF 01 00 00 
..\zip\boinc_zip.cpp(122) : {313} normal block at 0x000001BF5E701750, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x000001BF5E6F6B20, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{297} normal block at 0x000001BF5E706070, 16 bytes long.
 Data: <Hop^&#191;           > 48 6F 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x000001BF5E706750, 16 bytes long.
 Data: < op^&#191;           > 20 6F 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x000001BF5E6FF5C0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{294} normal block at 0x000001BF5E705CB0, 16 bytes long.
 Data: <&#248;np^&#191;           > F8 6E 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000001BF5E706610, 16 bytes long.
 Data: <&#208;np^&#191;           > D0 6E 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000001BF5E706340, 16 bytes long.
 Data: <&#168;np^&#191;           > A8 6E 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x000001BF5E706A70, 16 bytes long.
 Data: < np^&#191;           > 80 6E 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000001BF5E7053D0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{289} normal block at 0x000001BF5E706A20, 16 bytes long.
 Data: <(&#149;o^&#191;           > 28 95 6F 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000001BF5E6FF6E0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{287} normal block at 0x000001BF5E7068E0, 16 bytes long.
 Data: < &#149;o^&#191;           > 00 95 6F 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000001BF5E706200, 16 bytes long.
 Data: <&#216;&#148;o^&#191;           > D8 94 6F 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000001BF5E706700, 16 bytes long.
 Data: <&#176;&#148;o^&#191;           > B0 94 6F 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000001BF5E7061B0, 16 bytes long.
 Data: < &#148;o^&#191;           > 88 94 6F 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000001BF5E706930, 16 bytes long.
 Data: <`&#148;o^&#191;           > 60 94 6F 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000001BF5E706430, 16 bytes long.
 Data: <8&#148;o^&#191;           > 38 94 6F 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001BF5E6FF800, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{279} normal block at 0x000001BF5E706390, 16 bytes long.
 Data: < &#148;o^&#191;           > 10 94 6F 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000001BF5E6F9410, 320 bytes long.
 Data: < cp^&#191;    &#248;o^&#191;   > 90 63 70 5E BF 01 00 00 00 F8 6F 5E BF 01 00 00 
{277} normal block at 0x000001BF5E706840, 16 bytes long.
 Data: <`np^&#191;           > 60 6E 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000001BF5E7069D0, 16 bytes long.
 Data: <8np^&#191;           > 38 6E 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000001BF5E6FFE00, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{274} normal block at 0x000001BF5E7064D0, 16 bytes long.
 Data: < np^&#191;           > 10 6E 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000001BF5E700040, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{272} normal block at 0x000001BF5E706B10, 16 bytes long.
 Data: <Xmp^&#191;           > 58 6D 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000001BF5E7065C0, 16 bytes long.
 Data: <0mp^&#191;           > 30 6D 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000001BF5E706020, 16 bytes long.
 Data: < mp^&#191;           > 08 6D 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000001BF5E7066B0, 16 bytes long.
 Data: <&#224;lp^&#191;           > E0 6C 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000001BF5E705C60, 16 bytes long.
 Data: <&#184;lp^&#191;           > B8 6C 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000001BF5E706BB0, 16 bytes long.
 Data: < lp^&#191;           > 90 6C 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000001BF5E7062A0, 16 bytes long.
 Data: < Up^&#191;           > 90 55 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000001BF5E705590, 40 bytes long.
 Data: <&#160;bp^&#191;   &#176;R@`&#191;   > A0 62 70 5E BF 01 00 00 B0 52 40 60 BF 01 00 00 
{263} normal block at 0x000001BF5E706250, 16 bytes long.
 Data: <plp^&#191;           > 70 6C 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000001BF5E706980, 16 bytes long.
 Data: <Hlp^&#191;           > 48 6C 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000001BF5E6FF620, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{260} normal block at 0x000001BF5E706890, 16 bytes long.
 Data: < lp^&#191;           > 20 6C 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000001BF5E706C20, 992 bytes long.
 Data: < hp^&#191;    &#246;o^&#191;   > 90 68 70 5E BF 01 00 00 20 F6 6F 5E BF 01 00 00 
{95} normal block at 0x000001BF5E6FF9E0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{94} normal block at 0x000001BF5E6FE0D0, 16 bytes long.
 Data: <&#240;Rp^&#191;           > F0 52 70 5E BF 01 00 00 00 00 00 00 00 00 00 00 
{93} normal block at 0x000001BF5E7052F0, 40 bytes long.
 Data: <&#208;&#224;o^&#191;   &#224;&#249;o^&#191;   > D0 E0 6F 5E BF 01 00 00 E0 F9 6F 5E BF 01 00 00 
{72} normal block at 0x000001BF5E6FDD60, 16 bytes long.
 Data: < &#234;7&#255;&#247;           > 80 EA 37 FF F7 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x000001BF5E6FD860, 16 bytes long.
 Data: <@&#233;7&#255;&#247;           > 40 E9 37 FF F7 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x000001BF5E6FE260, 16 bytes long.
 Data: <&#248;W4&#255;&#247;           > F8 57 34 FF F7 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000001BF5E6FD9A0, 16 bytes long.
 Data: <&#216;W4&#255;&#247;           > D8 57 34 FF F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000001BF5E6FDB30, 16 bytes long.
 Data: <P 4&#255;&#247;           > 50 04 34 FF F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000001BF5E6FE3F0, 16 bytes long.
 Data: <0 4&#255;&#247;           > 30 04 34 FF F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000001BF5E6FD7C0, 16 bytes long.
 Data: <&#224; 4&#255;&#247;           > E0 02 34 FF F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000001BF5E6FDE00, 16 bytes long.
 Data: <  4&#255;&#247;           > 10 04 34 FF F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000001BF5E6FD8B0, 16 bytes long.
 Data: <p 4&#255;&#247;           > 70 04 34 FF F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000001BF5E6FE350, 16 bytes long.
 Data: < &#192;2&#255;&#247;           > 18 C0 32 FF F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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