Task 38659631

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
 (0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
11:36:59 (4088): wrapper (7.9.26016): starting
11:36:59 (4088): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
11:37:00 (4088): Library/usr/bin/tar.exe exited; CPU time 0.000000
11:37:00 (4088): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\6\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\6\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {3835106} normal block at 0x00000217E83212B0, 8 bytes long.
 Data: <  *     > 00 00 2A E8 17 02 00 00 
..\lib\diagnostics_win.cpp(417) : {3833956} normal block at 0x00000217E83FE6A0, 1080 bytes long.
 Data: < $              > 80 24 00 00 CD CD CD CD B8 01 00 00 00 00 00 00 
..\zip\boinc_zip.cpp(122) : {310} normal block at 0x00000217E83172E0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
Object dump complete.
12:48:16 (39804): wrapper (7.9.26016): starting
12:48:16 (39804): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\6\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Traceback (most recent call last):
  File "<frozen runpy>", line 198, in _run_module_as_main
  File "<frozen runpy>", line 88, in _run_code
  File "C:\ProgramData\BOINC\slots\6\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
  File "C:\ProgramData\BOINC\slots\6\Lib\site-packages\atom_openmm\rbfe_production.py", line 29, in rbfe_production
    rx = openmm_job_RBFE(
         ^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\6\Lib\site-packages\atom_openmm\openmm_async_re.py", line 443, in __init__
    self.openmm_workers.append(ommworkercls(self.basename, ommsys, self.keywords, node_info = node, compute = True, logger = self.logger))
                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\6\Lib\site-packages\atom_openmm\ommworker.py", line 53, in __init__
    self.start_worker()
  File "C:\ProgramData\BOINC\slots\6\Lib\site-packages\atom_openmm\ommworker.py", line 444, in start_worker
    self._openmm_worker_makecontext()
  File "C:\ProgramData\BOINC\slots\6\Lib\site-packages\atom_openmm\ommworker.py", line 229, in _openmm_worker_makecontext
    self.platform = Platform.getPlatformByName(self.platform_name)
                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\6\Lib\site-packages\openmm\openmm.py", line 17238, in getPlatformByName
    return _openmm.Platform_getPlatformByName(name)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: There is no registered Platform called "CUDA"
12:49:34 (39804): C:/Windows/system32/cmd.exe exited; CPU time 47.343750
12:49:34 (39804): app exit status: 0x16
12:49:34 (39804): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 1218644 bytes.
Dumping objects ->
{1541} normal block at 0x0000018923265CF0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1530} normal block at 0x00000189232659E0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1519} normal block at 0x0000018923265D60, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{1508} normal block at 0x0000018923265EB0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1497} normal block at 0x0000018923265970, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{1466} normal block at 0x0000018923251430, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {1453} normal block at 0x0000018923267510, 8 bytes long.
 Data: <   #    > 00 00 1F 23 89 01 00 00 
{304} normal block at 0x0000018923266ED0, 8 bytes long.
 Data: < u&#    > D0 75 26 23 89 01 00 00 
{295} normal block at 0x0000018923250140, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{294} normal block at 0x0000018923266BB0, 16 bytes long.
 Data: < d&#            > C8 64 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x00000189232671F0, 16 bytes long.
 Data: < d&#            > A0 64 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000001892325EFF0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{291} normal block at 0x0000018923266E80, 16 bytes long.
 Data: <xd&#            > 78 64 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x00000189232667A0, 16 bytes long.
 Data: <Pd&#            > 50 64 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x0000018923266750, 16 bytes long.
 Data: <(d&#            > 28 64 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x00000189232673D0, 16 bytes long.
 Data: < d&#            > 00 64 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000018923265900, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{286} normal block at 0x0000018923267240, 16 bytes long.
 Data: <H $#            > 48 D0 24 23 89 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000001892325F6B0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{284} normal block at 0x0000018923266930, 16 bytes long.
 Data: <  $#            > 20 D0 24 23 89 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000018923266F20, 16 bytes long.
 Data: <  $#            > F8 CF 24 23 89 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000018923266F70, 16 bytes long.
 Data: <  $#            > D0 CF 24 23 89 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000018923267420, 16 bytes long.
 Data: <  $#            > A8 CF 24 23 89 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x00000189232669D0, 16 bytes long.
 Data: <  $#            > 80 CF 24 23 89 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000018923267060, 16 bytes long.
 Data: <X $#            > 58 CF 24 23 89 01 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x000001892325F650, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{276} normal block at 0x00000189232674C0, 16 bytes long.
 Data: <0 $#            > 30 CF 24 23 89 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000001892324CF30, 320 bytes long.
 Data: < t&#    P %#    > C0 74 26 23 89 01 00 00 50 F6 25 23 89 01 00 00 
{274} normal block at 0x0000018923267100, 16 bytes long.
 Data: < c&#            > E0 63 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x00000189232666B0, 16 bytes long.
 Data: < c&#            > B8 63 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000001892325EB70, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{271} normal block at 0x0000018923266700, 16 bytes long.
 Data: < c&#            > 90 63 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000001892325F470, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{269} normal block at 0x0000018923266B10, 16 bytes long.
 Data: < b&#            > D8 62 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000018923267330, 16 bytes long.
 Data: < b&#            > B0 62 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000018923267560, 16 bytes long.
 Data: < b&#            > 88 62 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x0000018923266DE0, 16 bytes long.
 Data: <`b&#            > 60 62 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x00000189232668E0, 16 bytes long.
 Data: <8b&#            > 38 62 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x00000189232615A0, 16 bytes long.
 Data: < b&#            > 10 62 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x00000189232614B0, 16 bytes long.
 Data: < [&#            > A0 5B 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x0000018923265BA0, 40 bytes long.
 Data: <  &#    0 %#    > B0 14 26 23 89 01 00 00 30 14 25 23 89 01 00 00 
{260} normal block at 0x0000018923261320, 16 bytes long.
 Data: < a&#            > F0 61 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x00000189232612D0, 16 bytes long.
 Data: < a&#            > C8 61 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x000001892325F410, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{257} normal block at 0x0000018923261230, 16 bytes long.
 Data: < a&#            > A0 61 26 23 89 01 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x00000189232661A0, 992 bytes long.
 Data: <0 &#      %#    > 30 12 26 23 89 01 00 00 10 F4 25 23 89 01 00 00 
{92} normal block at 0x000001892325EC90, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{91} normal block at 0x0000018923261730, 16 bytes long.
 Data: <` $#            > 60 D1 24 23 89 01 00 00 00 00 00 00 00 00 00 00 
{90} normal block at 0x000001892324D160, 40 bytes long.
 Data: <0 &#      %#    > 30 17 26 23 89 01 00 00 90 EC 25 23 89 01 00 00 
{69} normal block at 0x0000018923261AA0, 16 bytes long.
 Data: <                > 80 EA 16 92 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x0000018923261690, 16 bytes long.
 Data: <@               > 40 E9 16 92 F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x0000018923261140, 16 bytes long.
 Data: < W              > F8 57 13 92 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000018923261460, 16 bytes long.
 Data: < W              > D8 57 13 92 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000018923261B90, 16 bytes long.
 Data: <P               > 50 04 13 92 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000018923260D80, 16 bytes long.
 Data: <0               > 30 04 13 92 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000018923261C80, 16 bytes long.
 Data: <                > E0 02 13 92 F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x0000018923261BE0, 16 bytes long.
 Data: <                > 10 04 13 92 F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x0000018923260D30, 16 bytes long.
 Data: <p               > 70 04 13 92 F6 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x0000018923261500, 16 bytes long.
 Data: <                > 18 C0 11 92 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>

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