Task 38659523

Name test_1515-GPUGRID_TEST_ATM_2STEP_20261024-0-2-RND3564_0
Workunit 31603068
Created 24 Oct 2026, 13:28:49 UTC
Sent 24 Oct 2026, 15:41:38 UTC
Report deadline 29 Oct 2026, 15:41:38 UTC
Received 25 Oct 2026, 12:26:49 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 635136
Run time 32 min 43 sec
CPU time 31 min 10 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 9,219.62 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 695.31 MB
Peak swap size 5.24 GB
Peak disk usage 2.97 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
17:28:48 (5492): wrapper (7.9.26016): starting
17:28:48 (5492): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
17:28:49 (5492): Library/usr/bin/tar.exe exited; CPU time 0.000000
17:28:49 (5492): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
18:01:04 (5492): C:/Windows/system32/cmd.exe exited; CPU time 1870.046875
18:01:04 (5492): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 36916987 bytes.
Dumping objects ->
{3835188} normal block at 0x0000027B2D7712C0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835177} normal block at 0x0000027B2D770E60, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835166} normal block at 0x0000027B2D770CA0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835155} normal block at 0x0000027B2D770DF0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835144} normal block at 0x0000027B2D770D80, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835113} normal block at 0x0000027B2D81AE90, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835100} normal block at 0x0000027B2BC76410, 8 bytes long.
 Data: <  _-{   > 00 00 5F 2D 7B 02 00 00 
{3833951} normal block at 0x0000027B2BC76550, 8 bytes long.
 Data: <&#192;&#247;&#204;+{   > C0 F7 CC 2B 7B 02 00 00 
..\zip\boinc_zip.cpp(122) : {307} normal block at 0x0000027B2BC81140, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000027B2BC6AF00, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{291} normal block at 0x0000027B2BC82D60, 16 bytes long.
 Data: <x7&#200;+{           > 78 37 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000027B2BC828B0, 16 bytes long.
 Data: <P7&#200;+{           > 50 37 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x0000027B2BC7C9A0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{288} normal block at 0x0000027B2BC82810, 16 bytes long.
 Data: <(7&#200;+{           > 28 37 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000027B2BC82AE0, 16 bytes long.
 Data: < 7&#200;+{           > 00 37 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x0000027B2BC826D0, 16 bytes long.
 Data: <&#216;6&#200;+{           > D8 36 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000027B2BC827C0, 16 bytes long.
 Data: <&#176;6&#200;+{           > B0 36 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000027B2BC7B700, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{283} normal block at 0x0000027B2BC82680, 16 bytes long.
 Data: < &#197;&#199;+{           > 88 C5 C7 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000027B2BC7CF40, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{281} normal block at 0x0000027B2BC82C70, 16 bytes long.
 Data: <`&#197;&#199;+{           > 60 C5 C7 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000027B2BC82630, 16 bytes long.
 Data: <8&#197;&#199;+{           > 38 C5 C7 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000027B2BC82180, 16 bytes long.
 Data: < &#197;&#199;+{           > 10 C5 C7 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x0000027B2BC82DB0, 16 bytes long.
 Data: <&#232;&#196;&#199;+{           > E8 C4 C7 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000027B2BC82770, 16 bytes long.
 Data: <&#192;&#196;&#199;+{           > C0 C4 C7 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000027B2BC82130, 16 bytes long.
 Data: < &#196;&#199;+{           > 98 C4 C7 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x0000027B2BC7D360, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{273} normal block at 0x0000027B2BC82F40, 16 bytes long.
 Data: <p&#196;&#199;+{           > 70 C4 C7 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x0000027B2BC7C470, 320 bytes long.
 Data: <@/&#200;+{   `&#211;&#199;+{   > 40 2F C8 2B 7B 02 00 00 60 D3 C7 2B 7B 02 00 00 
{271} normal block at 0x0000027B2BC82590, 16 bytes long.
 Data: < 6&#200;+{           > 90 36 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000027B2BC82950, 16 bytes long.
 Data: <h6&#200;+{           > 68 36 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x0000027B2BC7CB20, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{268} normal block at 0x0000027B2BC82900, 16 bytes long.
 Data: <@6&#200;+{           > 40 36 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000027B2BC7D420, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{266} normal block at 0x0000027B2BC820E0, 16 bytes long.
 Data: < 5&#200;+{           > 88 35 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000027B2BC82E50, 16 bytes long.
 Data: <`5&#200;+{           > 60 35 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000027B2BC82860, 16 bytes long.
 Data: <85&#200;+{           > 38 35 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x0000027B2BC82450, 16 bytes long.
 Data: < 5&#200;+{           > 10 35 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000027B2BC82D10, 16 bytes long.
 Data: <&#232;4&#200;+{           > E8 34 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x0000027B2BC824A0, 16 bytes long.
 Data: <&#192;4&#200;+{           > C0 34 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x0000027B2BC82400, 16 bytes long.
 Data: <&#176;&#181;&#199;+{           > B0 B5 C7 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x0000027B2BC7B5B0, 40 bytes long.
 Data: < $&#200;+{    &#174; -{   > 00 24 C8 2B 7B 02 00 00 90 AE 81 2D 7B 02 00 00 
{257} normal block at 0x0000027B2BC821D0, 16 bytes long.
 Data: <&#160;4&#200;+{           > A0 34 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x0000027B2BC82C20, 16 bytes long.
 Data: <x4&#200;+{           > 78 34 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{255} normal block at 0x0000027B2BC7C820, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{254} normal block at 0x0000027B2BC82FE0, 16 bytes long.
 Data: <P4&#200;+{           > 50 34 C8 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{253} normal block at 0x0000027B2BC83450, 992 bytes long.
 Data: <&#224;/&#200;+{    &#200;&#199;+{   > E0 2F C8 2B 7B 02 00 00 20 C8 C7 2B 7B 02 00 00 
{89} normal block at 0x0000027B2BC7C760, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{88} normal block at 0x0000027B2BC768C0, 16 bytes long.
 Data: < &#182;&#199;+{           > 90 B6 C7 2B 7B 02 00 00 00 00 00 00 00 00 00 00 
{87} normal block at 0x0000027B2BC7B690, 40 bytes long.
 Data: <&#192;h&#199;+{   `&#199;&#199;+{   > C0 68 C7 2B 7B 02 00 00 60 C7 C7 2B 7B 02 00 00 
{66} normal block at 0x0000027B2BC77130, 16 bytes long.
 Data: < &#234;?0&#246;           > 80 EA 3F 30 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000027B2BC76500, 16 bytes long.
 Data: <@&#233;?0&#246;           > 40 E9 3F 30 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000027B2BC76820, 16 bytes long.
 Data: <&#248;W<0&#246;           > F8 57 3C 30 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000027B2BC77040, 16 bytes long.
 Data: <&#216;W<0&#246;           > D8 57 3C 30 F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x0000027B2BC76910, 16 bytes long.
 Data: <P <0&#246;           > 50 04 3C 30 F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x0000027B2BC76C80, 16 bytes long.
 Data: <0 <0&#246;           > 30 04 3C 30 F6 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x0000027B2BC76730, 16 bytes long.
 Data: <&#224; <0&#246;           > E0 02 3C 30 F6 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x0000027B2BC76780, 16 bytes long.
 Data: <  <0&#246;           > 10 04 3C 30 F6 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x0000027B2BC76DC0, 16 bytes long.
 Data: <p <0&#246;           > 70 04 3C 30 F6 7F 00 00 00 00 00 00 00 00 00 00 
{57} normal block at 0x0000027B2BC76FF0, 16 bytes long.
 Data: < &#192;:0&#246;           > 18 C0 3A 30 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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