Task 38657293

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<message>
Das Betriebssystem kann (null) nicht ausf�hren.
 (0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
13:44:38 (12188): wrapper (7.9.26016): starting
13:44:38 (12188): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
13:44:39 (12188): Library/usr/bin/tar.exe exited; CPU time 0.000000
13:44:39 (12188): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {3835334} normal block at 0x00000287FB2EF3B0, 8 bytes long.
 Data: <        > 00 00 82 FB 87 02 00 00 
..\lib\diagnostics_win.cpp(417) : {3833960} normal block at 0x00000287FB3CEB60, 1080 bytes long.
 Data: < b      T       > 04 62 00 00 CD CD CD CD 54 01 00 00 00 00 00 00 
..\zip\boinc_zip.cpp(122) : {312} normal block at 0x00000287FB2F13D0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
Object dump complete.
13:55:45 (25944): wrapper (7.9.26016): starting
13:55:45 (25944): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
Ein Unterverzeichnis oder eine Datei mit dem Namen "C:\ProgramData\BOINC\slots\0\tmp" existiert bereits.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Traceback (most recent call last):
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\openmm_async_re.py", line 432, in __init__
    replica = OMMReplicaATM(i, self.basename, self.service_worker, self.logger, self.keywords)
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommreplica.py", line 41, in __init__
    self.load_checkpoint()
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommreplica.py", line 79, in load_checkpoint
    self.worker.simulation.loadState(ckptfile)
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\openmm\app\simulation.py", line 363, in loadState
    self.context.setState(mm.XmlSerializer.deserialize(xml))
                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\openmm\openmm.py", line 19618, in deserialize
    raise ValueError("Invalid input string")
ValueError: Invalid input string

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<frozen runpy>", line 198, in _run_module_as_main
  File "<frozen runpy>", line 88, in _run_code
  File "C:\ProgramData\BOINC\slots\0\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\rbfe_production.py", line 29, in rbfe_production
    rx = openmm_job_RBFE(
         ^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\openmm_async_re.py", line 434, in __init__
    self._exit("Error when creating replica.")
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\async_re.py", line 69, in _exit
    self.checkpointJob()
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\openmm_async_re.py", line 48, in checkpointJob
    self.update_state_of_replica(repl)
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\openmm_async_re.py", line 86, in update_state_of_replica
    stateid = self.status[repl]['stateid_current']
              ^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\async_re.py", line 131, in __getattribute__
    return object.__getattribute__(self,name)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: 'openmm_job_RBFE' object has no attribute 'status'
13:56:01 (25944): C:/Windows/system32/cmd.exe exited; CPU time 9.734375
13:56:01 (25944): app exit status: 0x16
13:56:01 (25944): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 268852 bytes.
Dumping objects ->
{1767} normal block at 0x0000019190266E30, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1756} normal block at 0x0000019190266F80, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1745} normal block at 0x0000019190267300, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{1734} normal block at 0x000001919024D4E0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1723} normal block at 0x000001919024EFE0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{1692} normal block at 0x0000019190259030, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {1679} normal block at 0x0000019190265110, 8 bytes long.
 Data: <        > 00 00 87 90 91 01 00 00 
{306} normal block at 0x0000019190265160, 8 bytes long.
 Data: < _&     > 90 5F 26 90 91 01 00 00 
{297} normal block at 0x00000191902566F0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{296} normal block at 0x0000019190265520, 16 bytes long.
 Data: < ^&             > 98 5E 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x0000019190264CB0, 16 bytes long.
 Data: <p^&             > 70 5E 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x000001919025FAC0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{293} normal block at 0x00000191902648A0, 16 bytes long.
 Data: <H^&             > 48 5E 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000019190264C10, 16 bytes long.
 Data: < ^&             > 20 5E 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x00000191902650C0, 16 bytes long.
 Data: < ]&             > F8 5D 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000019190264850, 16 bytes long.
 Data: < ]&             > D0 5D 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000001919024F050, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{288} normal block at 0x0000019190264E90, 16 bytes long.
 Data: <h $             > 68 F4 24 90 91 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000001919025FFA0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{286} normal block at 0x0000019190265660, 16 bytes long.
 Data: <@ $             > 40 F4 24 90 91 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000019190265700, 16 bytes long.
 Data: <  $             > 18 F4 24 90 91 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000019190265070, 16 bytes long.
 Data: <  $             > F0 F3 24 90 91 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x00000191902654D0, 16 bytes long.
 Data: <  $             > C8 F3 24 90 91 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x00000191902648F0, 16 bytes long.
 Data: <  $             > A0 F3 24 90 91 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000019190264F30, 16 bytes long.
 Data: <x $             > 78 F3 24 90 91 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000001919025FE20, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{278} normal block at 0x0000019190265610, 16 bytes long.
 Data: <P $             > 50 F3 24 90 91 01 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x000001919024F350, 320 bytes long.
 Data: < V&       %     > 10 56 26 90 91 01 00 00 20 FE 25 90 91 01 00 00 
{276} normal block at 0x0000019190264DF0, 16 bytes long.
 Data: < ]&             > B0 5D 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x00000191902656B0, 16 bytes long.
 Data: < ]&             > 88 5D 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x0000019190260060, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{273} normal block at 0x00000191902653E0, 16 bytes long.
 Data: <`]&             > 60 5D 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000001919025FA60, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{271} normal block at 0x0000019190264EE0, 16 bytes long.
 Data: < \&             > A8 5C 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000019190264BC0, 16 bytes long.
 Data: < \&             > 80 5C 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x0000019190265430, 16 bytes long.
 Data: <X\&             > 58 5C 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000019190265020, 16 bytes long.
 Data: <0\&             > 30 5C 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000019190264C60, 16 bytes long.
 Data: < \&             > 08 5C 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x0000019190264800, 16 bytes long.
 Data: < [&             > E0 5B 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000019190264FD0, 16 bytes long.
 Data: <p $             > 70 D4 24 90 91 01 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x000001919024D470, 40 bytes long.
 Data: < O&     0 %     > D0 4F 26 90 91 01 00 00 30 90 25 90 91 01 00 00 
{262} normal block at 0x0000019190264D50, 16 bytes long.
 Data: < [&             > C0 5B 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x00000191902649E0, 16 bytes long.
 Data: < [&             > 98 5B 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x0000019190260240, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{259} normal block at 0x0000019190264F80, 16 bytes long.
 Data: <p[&             > 70 5B 26 90 91 01 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x0000019190265B70, 992 bytes long.
 Data: < O&     @ &     > 80 4F 26 90 91 01 00 00 40 02 26 90 91 01 00 00 
{94} normal block at 0x00000191902601E0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{93} normal block at 0x000001919025EC80, 16 bytes long.
 Data: <  $             > 20 DA 24 90 91 01 00 00 00 00 00 00 00 00 00 00 
{92} normal block at 0x000001919024DA20, 40 bytes long.
 Data: <  %       &     > 80 EC 25 90 91 01 00 00 E0 01 26 90 91 01 00 00 
{71} normal block at 0x000001919025F3B0, 16 bytes long.
 Data: <   "            > 80 EA F1 22 F7 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x000001919025F450, 16 bytes long.
 Data: <@  "            > 40 E9 F1 22 F7 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000001919025E910, 16 bytes long.
 Data: < W "            > F8 57 EE 22 F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000001919025F220, 16 bytes long.
 Data: < W "            > D8 57 EE 22 F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000001919025F180, 16 bytes long.
 Data: <P  "            > 50 04 EE 22 F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000001919025EAF0, 16 bytes long.
 Data: <0  "            > 30 04 EE 22 F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000001919025F2C0, 16 bytes long.
 Data: <   "            > E0 02 EE 22 F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000001919025F630, 16 bytes long.
 Data: <   "            > 10 04 EE 22 F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000001919025F270, 16 bytes long.
 Data: <p  "            > 70 04 EE 22 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000001919025F130, 16 bytes long.
 Data: <   "            > 18 C0 EC 22 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>

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