Task 38653514

Name test_472-GPUGRID_TEST_ATM_40STEP_20261023-3-40-RND8894_0
Workunit 31597461
Created 24 Oct 2026, 5:44:36 UTC
Sent 24 Oct 2026, 6:07:06 UTC
Report deadline 29 Oct 2026, 6:07:06 UTC
Received 24 Oct 2026, 14:12:27 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 653921
Run time 1 hours 21 min 38 sec
CPU time 1 hours 21 min 38 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 9,101.86 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 675.11 MB
Peak swap size 6.82 GB
Peak disk usage 4.20 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
17:31:56 (28340): wrapper (7.9.26016): starting
17:31:56 (28340): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
17:31:59 (28340): Library/usr/bin/tar.exe exited; CPU time 0.031250
17:31:59 (28340): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
19:11:22 (28340): C:/Windows/system32/cmd.exe exited; CPU time 4898.125000
19:11:22 (28340): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 126861079 bytes.
Dumping objects ->
{3835177} normal block at 0x0000016E5E65AC10, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835166} normal block at 0x0000016E5E65A740, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835155} normal block at 0x0000016E5E65ADD0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835144} normal block at 0x0000016E5E65A580, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835133} normal block at 0x0000016E5E65ACF0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835102} normal block at 0x0000016E60285130, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835089} normal block at 0x0000016E5E637DE0, 8 bytes long.
 Data: <  ^^n   > 00 00 5E 5E 6E 01 00 00 
{3833949} normal block at 0x0000016E5E637AC0, 8 bytes long.
 Data: <pV(`n   > 70 56 28 60 6E 01 00 00 
..\zip\boinc_zip.cpp(122) : {306} normal block at 0x0000016E5E635940, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000016E5E615610, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{290} normal block at 0x0000016E5E637570, 16 bytes long.
 Data: <&#216;nc^n           > D8 6E 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x0000016E5E637C50, 16 bytes long.
 Data: <&#176;nc^n           > B0 6E 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x0000016E5E62A500, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{287} normal block at 0x0000016E5E637CA0, 16 bytes long.
 Data: < nc^n           > 88 6E 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x0000016E5E633A80, 16 bytes long.
 Data: <`nc^n           > 60 6E 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000016E5E633A30, 16 bytes long.
 Data: <8nc^n           > 38 6E 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000016E5E6338F0, 16 bytes long.
 Data: < nc^n           > 10 6E 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000016E5E631D60, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{282} normal block at 0x0000016E5E6339E0, 16 bytes long.
 Data: < &#193;a^n           > 18 C1 61 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000016E5E629D20, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{280} normal block at 0x0000016E5E633990, 16 bytes long.
 Data: <&#240;&#192;a^n           > F0 C0 61 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000016E5E6338A0, 16 bytes long.
 Data: <&#200;&#192;a^n           > C8 C0 61 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x0000016E5E633850, 16 bytes long.
 Data: <&#160;&#192;a^n           > A0 C0 61 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000016E5E6337B0, 16 bytes long.
 Data: <x&#192;a^n           > 78 C0 61 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000016E5E633300, 16 bytes long.
 Data: <P&#192;a^n           > 50 C0 61 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x0000016E5E633080, 16 bytes long.
 Data: <(&#192;a^n           > 28 C0 61 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x0000016E5E62A1A0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{272} normal block at 0x0000016E5E633030, 16 bytes long.
 Data: < &#192;a^n           > 00 C0 61 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x0000016E5E61C000, 320 bytes long.
 Data: <00c^n   &#160;&#161;b^n   > 30 30 63 5E 6E 01 00 00 A0 A1 62 5E 6E 01 00 00 
{270} normal block at 0x0000016E5E633CB0, 16 bytes long.
 Data: <&#240;mc^n           > F0 6D 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x0000016E5E633620, 16 bytes long.
 Data: <&#200;mc^n           > C8 6D 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000016E5E629F60, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{267} normal block at 0x0000016E5E633580, 16 bytes long.
 Data: <&#160;mc^n           > A0 6D 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x0000016E5E629DE0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{265} normal block at 0x0000016E5E6332B0, 16 bytes long.
 Data: <&#232;lc^n           > E8 6C 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000016E5E633260, 16 bytes long.
 Data: <&#192;lc^n           > C0 6C 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x0000016E5E633210, 16 bytes long.
 Data: < lc^n           > 98 6C 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000016E5E6331C0, 16 bytes long.
 Data: <plc^n           > 70 6C 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x0000016E5E633760, 16 bytes long.
 Data: <Hlc^n           > 48 6C 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x0000016E5E633E40, 16 bytes long.
 Data: < lc^n           > 20 6C 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x0000016E5E633710, 16 bytes long.
 Data: <  c^n           > 20 18 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x0000016E5E631820, 40 bytes long.
 Data: < 7c^n   0Q(`n   > 10 37 63 5E 6E 01 00 00 30 51 28 60 6E 01 00 00 
{256} normal block at 0x0000016E5E6335D0, 16 bytes long.
 Data: < lc^n           > 00 6C 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{255} normal block at 0x0000016E5E633350, 16 bytes long.
 Data: <&#216;kc^n           > D8 6B 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{254} normal block at 0x0000016E5E62A3E0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{253} normal block at 0x0000016E5E633670, 16 bytes long.
 Data: <&#176;kc^n           > B0 6B 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{252} normal block at 0x0000016E5E636BB0, 992 bytes long.
 Data: <p6c^n   &#224;&#163;b^n   > 70 36 63 5E 6E 01 00 00 E0 A3 62 5E 6E 01 00 00 
{88} normal block at 0x0000016E5E629FC0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{87} normal block at 0x0000016E5E633800, 16 bytes long.
 Data: <&#224; c^n           > E0 19 63 5E 6E 01 00 00 00 00 00 00 00 00 00 00 
{86} normal block at 0x0000016E5E6319E0, 40 bytes long.
 Data: < 8c^n   &#192;&#159;b^n   > 00 38 63 5E 6E 01 00 00 C0 9F 62 5E 6E 01 00 00 
{65} normal block at 0x0000016E5E633940, 16 bytes long.
 Data: <&#128;&#234;&#211;&#168;&#247;           > 80 EA D3 A8 F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000016E5E633DA0, 16 bytes long.
 Data: <@&#233;&#211;&#168;&#247;           > 40 E9 D3 A8 F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000016E5E633D00, 16 bytes long.
 Data: <&#248;W&#208;&#168;&#247;           > F8 57 D0 A8 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x0000016E5E632F90, 16 bytes long.
 Data: <&#216;W&#208;&#168;&#247;           > D8 57 D0 A8 F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x0000016E5E627170, 16 bytes long.
 Data: <P &#208;&#168;&#247;           > 50 04 D0 A8 F7 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x0000016E5E627120, 16 bytes long.
 Data: <0 &#208;&#168;&#247;           > 30 04 D0 A8 F7 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x0000016E5E627030, 16 bytes long.
 Data: <&#224; &#208;&#168;&#247;           > E0 02 D0 A8 F7 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x0000016E5E626F90, 16 bytes long.
 Data: <  &#208;&#168;&#247;           > 10 04 D0 A8 F7 7F 00 00 00 00 00 00 00 00 00 00 
{57} normal block at 0x0000016E5E626FE0, 16 bytes long.
 Data: <p &#208;&#168;&#247;           > 70 04 D0 A8 F7 7F 00 00 00 00 00 00 00 00 00 00 
{56} normal block at 0x0000016E5E626F40, 16 bytes long.
 Data: < &#192;&#206;&#168;&#247;           > 18 C0 CE A8 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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