Task 38653310

Name test_147-GPUGRID_TEST_ATM_40STEP_20261023-4-40-RND3124_0
Workunit 31597286
Created 24 Oct 2026, 5:23:22 UTC
Sent 24 Oct 2026, 6:53:42 UTC
Report deadline 29 Oct 2026, 6:53:42 UTC
Received 24 Oct 2026, 8:34:45 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 654255
Run time 41 min 53 sec
CPU time 38 min 24 sec
Validate state Valid
Credit 60,000.00
Device peak FLOPS 12,956.20 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 652.23 MB
Peak swap size 5.33 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
09:49:40 (13740): wrapper (7.9.26016): starting
09:49:40 (13740): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
09:49:43 (13740): Library/usr/bin/tar.exe exited; CPU time 0.000000
09:49:43 (13740): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
"DOSKEY" non &#138; riconosciuto come comando interno o esterno,
 un programma eseguibile o un file batch.
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {3835204} normal block at 0x000001B249C9E4F0, 8 bytes long.
 Data: <   J    > 00 00 1A 4A B2 01 00 00 
..\lib\diagnostics_win.cpp(417) : {3833968} normal block at 0x000001B24BA946C0, 1080 bytes long.
 Data: <                > D4 8C 00 00 CD CD CD CD F8 01 00 00 00 00 00 00 
..\zip\boinc_zip.cpp(122) : {316} normal block at 0x000001B249CA1A50, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
Object dump complete.
09:53:54 (9252): wrapper (7.9.26016): starting
09:53:54 (9252): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
"DOSKEY" non &#138; riconosciuto come comando interno o esterno,
 un programma eseguibile o un file batch.
Sottodirectory o file C:\ProgramData\BOINC\slots\0\tmp gi&#133; esistente.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1545} normal block at 0x00000192B34E66E0, 8 bytes long.
 Data: <        > 00 00 9E B3 92 01 00 00 
..\lib\diagnostics_win.cpp(417) : {309} normal block at 0x00000192B34E7160, 1080 bytes long.
 Data: < Z      P       > A0 5A 00 00 CD CD CD CD 50 01 00 00 00 00 00 00 
Object dump complete.
10:09:49 (31488): wrapper (7.9.26016): starting
10:09:49 (31488): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
"DOSKEY" non &#138; riconosciuto come comando interno o esterno,
 un programma eseguibile o un file batch.
Sottodirectory o file C:\ProgramData\BOINC\slots\0\tmp gi&#133; esistente.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1545} normal block at 0x0000016148306000, 8 bytes long.
 Data: <   Ha   > 00 00 94 48 61 01 00 00 
..\lib\diagnostics_win.cpp(417) : {309} normal block at 0x0000016148307340, 1080 bytes long.
 Data: < v      T       > D4 76 00 00 CD CD CD CD 54 01 00 00 00 00 00 00 
Object dump complete.
10:25:44 (20332): wrapper (7.9.26016): starting
10:25:44 (20332): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
"DOSKEY" non &#138; riconosciuto come comando interno o esterno,
 un programma eseguibile o un file batch.
Sottodirectory o file C:\ProgramData\BOINC\slots\0\tmp gi&#133; esistente.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: r*/*.xtc: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
10:34:26 (20332): C:/Windows/system32/cmd.exe exited; CPU time 481.562500
10:34:26 (20332): called boinc_finish(0)
0 bytes in 0 Free Blocks.
426 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 10500069 bytes.
Dumping objects ->
{1634} normal block at 0x00000256AEB259E0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1623} normal block at 0x00000256AEB25430, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1612} normal block at 0x00000256AEB255F0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{1601} normal block at 0x00000256AEB25900, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1590} normal block at 0x00000256AEB25890, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{1559} normal block at 0x00000256AEB0FAC0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1548} normal block at 0x00000256AEB0C930, 85 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {1545} normal block at 0x00000256AEB26A50, 8 bytes long.
 Data: <    V   > 00 00 AA AE 56 02 00 00 
{917} normal block at 0x00000256AEB0BD20, 85 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{310} normal block at 0x00000256AEB26460, 8 bytes long.
 Data: <@s  V   > 40 73 B2 AE 56 02 00 00 
{301} normal block at 0x00000256AEB17630, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{300} normal block at 0x00000256AEB265F0, 16 bytes long.
 Data: <Hr  V           > 48 72 B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{299} normal block at 0x00000256AEB26AA0, 16 bytes long.
 Data: < r  V           > 20 72 B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x00000256AEB1FF80, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{297} normal block at 0x00000256AEB26D70, 16 bytes long.
 Data: < q  V           > F8 71 B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x00000256AEB26CD0, 16 bytes long.
 Data: < q  V           > D0 71 B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x00000256AEB26190, 16 bytes long.
 Data: < q  V           > A8 71 B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x00000256AEB265A0, 16 bytes long.
 Data: < q  V           > 80 71 B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x00000256AEB25970, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{292} normal block at 0x00000256AEB26410, 16 bytes long.
 Data: <    V           > B8 BC B0 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x00000256AEB20160, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{290} normal block at 0x00000256AEB26140, 16 bytes long.
 Data: <    V           > 90 BC B0 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x00000256AEB26690, 16 bytes long.
 Data: <h   V           > 68 BC B0 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x00000256AEB26640, 16 bytes long.
 Data: <@   V           > 40 BC B0 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x00000256AEB260F0, 16 bytes long.
 Data: <    V           > 18 BC B0 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x00000256AEB26370, 16 bytes long.
 Data: <    V           > F0 BB B0 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x00000256AEB26500, 16 bytes long.
 Data: <    V           > C8 BB B0 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x00000256AEB20400, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{282} normal block at 0x00000256AEB25FB0, 16 bytes long.
 Data: <    V           > A0 BB B0 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x00000256AEB0BBA0, 320 bytes long.
 Data: < _  V       V   > B0 5F B2 AE 56 02 00 00 00 04 B2 AE 56 02 00 00 
{280} normal block at 0x00000256AEB26320, 16 bytes long.
 Data: <`q  V           > 60 71 B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x00000256AEB26D20, 16 bytes long.
 Data: <8q  V           > 38 71 B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x00000256AEB1FD40, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{277} normal block at 0x00000256AEB26AF0, 16 bytes long.
 Data: < q  V           > 10 71 B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x00000256AEB20520, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{275} normal block at 0x00000256AEB26C80, 16 bytes long.
 Data: <Xp  V           > 58 70 B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x00000256AEB26230, 16 bytes long.
 Data: <0p  V           > 30 70 B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x00000256AEB26960, 16 bytes long.
 Data: < p  V           > 08 70 B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x00000256AEB268C0, 16 bytes long.
 Data: < o  V           > E0 6F B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x00000256AEB264B0, 16 bytes long.
 Data: < o  V           > B8 6F B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x00000256AEB263C0, 16 bytes long.
 Data: < o  V           > 90 6F B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x00000256AEB266E0, 16 bytes long.
 Data: <`V  V           > 60 56 B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x00000256AEB25660, 40 bytes long.
 Data: < f  V       V   > E0 66 B2 AE 56 02 00 00 C0 FA B0 AE 56 02 00 00 
{266} normal block at 0x00000256AEB260A0, 16 bytes long.
 Data: <po  V           > 70 6F B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x00000256AEB26870, 16 bytes long.
 Data: <Ho  V           > 48 6F B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x00000256AEB20100, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{263} normal block at 0x00000256AEB262D0, 16 bytes long.
 Data: < o  V           > 20 6F B2 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x00000256AEB26F20, 992 bytes long.
 Data: < b  V       V   > D0 62 B2 AE 56 02 00 00 00 01 B2 AE 56 02 00 00 
{98} normal block at 0x00000256AEB1FDA0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{97} normal block at 0x00000256AEB1E630, 16 bytes long.
 Data: <    V           > C0 C8 B0 AE 56 02 00 00 00 00 00 00 00 00 00 00 
{96} normal block at 0x00000256AEB0C8C0, 40 bytes long.
 Data: <0   V       V   > 30 E6 B1 AE 56 02 00 00 A0 FD B1 AE 56 02 00 00 
{75} normal block at 0x00000256AEB1E2C0, 16 bytes long.
 Data: <                > 80 EA DA F8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{74} normal block at 0x00000256AEB1DC80, 16 bytes long.
 Data: <@               > 40 E9 DA F8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{73} normal block at 0x00000256AEB1DEB0, 16 bytes long.
 Data: < W              > F8 57 D7 F8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{72} normal block at 0x00000256AEB1D870, 16 bytes long.
 Data: < W              > D8 57 D7 F8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x00000256AEB1DFA0, 16 bytes long.
 Data: <P               > 50 04 D7 F8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x00000256AEB1E0E0, 16 bytes long.
 Data: <0               > 30 04 D7 F8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x00000256AEB1E590, 16 bytes long.
 Data: <                > E0 02 D7 F8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x00000256AEB1DE10, 16 bytes long.
 Data: <                > 10 04 D7 F8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x00000256AEB1E5E0, 16 bytes long.
 Data: <p               > 70 04 D7 F8 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x00000256AEB1DB90, 16 bytes long.
 Data: <                > 18 C0 D5 F8 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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