Task 38649697

Name test_851-GPUGRID_TEST_ATM_4STEP_20261023-1-4-RND6661_0
Workunit 31594294
Created 23 Oct 2026, 21:54:38 UTC
Sent 23 Oct 2026, 22:10:56 UTC
Report deadline 28 Oct 2026, 22:10:56 UTC
Received 24 Oct 2026, 0:48:59 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 195 (0x000000C3) EXIT_CHILD_FAILED
Computer ID 654696
Run time 9 min 52 sec
CPU time 8 min 5 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 20,317.22 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 718.66 MB
Peak swap size 12.94 GB
Peak disk usage 3.03 GB

Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<message>
Das Betriebssystem kann (null) nicht ausf�hren.
 (0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
02:19:27 (31844): wrapper (7.9.26016): starting
02:19:27 (31844): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A34_A12_0.pdb
QB_A34_A12_0.xml
QB_A34_A12_input.yaml
QB_A34_A12.pdb
QB_A34_A12.prmtop
QB_A34_A12_sys.xml
run.bat
run.sh
02:19:29 (31844): Library/usr/bin/tar.exe exited; CPU time 0.000000
02:19:29 (31844): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {3835205} normal block at 0x0000011F12C59940, 8 bytes long.
 Data: <        > 00 00 BB 12 1F 01 00 00 
..\lib\diagnostics_win.cpp(417) : {3833972} normal block at 0x0000011F12C64F80, 1080 bytes long.
 Data: < a      P       > C4 61 00 00 CD CD CD CD 50 01 00 00 00 00 00 00 
..\zip\boinc_zip.cpp(122) : {318} normal block at 0x0000011F12C65930, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
Object dump complete.
02:29:08 (21280): wrapper (7.9.26016): starting
02:29:08 (21280): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
Ein Unterverzeichnis oder eine Datei mit dem Namen "C:\ProgramData\BOINC\slots\0\tmp" existiert bereits.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1544} normal block at 0x000001A5F6EE5520, 8 bytes long.
 Data: <        > 00 00 E3 F6 A5 01 00 00 
..\lib\diagnostics_win.cpp(417) : {311} normal block at 0x000001A5F6EE6400, 1080 bytes long.
 Data: <|4      L       > 7C 34 00 00 CD CD CD CD 4C 01 00 00 00 00 00 00 
Object dump complete.
02:34:49 (15296): wrapper (7.9.26016): starting
02:34:49 (15296): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
Ein Unterverzeichnis oder eine Datei mit dem Namen "C:\ProgramData\BOINC\slots\0\tmp" existiert bereits.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1544} normal block at 0x000001D3160978C0, 8 bytes long.
 Data: <        > 00 00 FD 15 D3 01 00 00 
..\lib\diagnostics_win.cpp(417) : {311} normal block at 0x000001D316098070, 1080 bytes long.
 Data: < .      H       > C0 2E 00 00 CD CD CD CD 48 01 00 00 00 00 00 00 
Object dump complete.
02:47:20 (39208): wrapper (7.9.26016): starting
02:47:20 (39208): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
Ein Unterverzeichnis oder eine Datei mit dem Namen "C:\ProgramData\BOINC\slots\0\tmp" existiert bereits.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Traceback (most recent call last):
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\openmm_async_re.py", line 432, in __init__
    replica = OMMReplicaATM(i, self.basename, self.service_worker, self.logger, self.keywords)
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommreplica.py", line 41, in __init__
    self.load_checkpoint()
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommreplica.py", line 79, in load_checkpoint
    self.worker.simulation.loadState(ckptfile)
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\openmm\app\simulation.py", line 363, in loadState
    self.context.setState(mm.XmlSerializer.deserialize(xml))
                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\openmm\openmm.py", line 19618, in deserialize
    raise ValueError("Invalid input string")
ValueError: Invalid input string

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<frozen runpy>", line 198, in _run_module_as_main
  File "<frozen runpy>", line 88, in _run_code
  File "C:\ProgramData\BOINC\slots\0\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\rbfe_production.py", line 29, in rbfe_production
    rx = openmm_job_RBFE(
         ^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\openmm_async_re.py", line 434, in __init__
    self._exit("Error when creating replica.")
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\async_re.py", line 69, in _exit
    self.checkpointJob()
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\openmm_async_re.py", line 48, in checkpointJob
    self.update_state_of_replica(repl)
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\openmm_async_re.py", line 80, in update_state_of_replica
    replica = self.openmm_replicas[repl]
              ~~~~~~~~~~~~~~~~~~~~^^^^^^
IndexError: list index out of range
02:47:39 (39208): C:/Windows/system32/cmd.exe exited; CPU time 9.828125
02:47:39 (39208): app exit status: 0x16
02:47:39 (39208): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 429774 bytes.
Dumping objects ->
{1632} normal block at 0x00000200E9DCCA50, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1621} normal block at 0x00000200E9DCCC10, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1610} normal block at 0x00000200E9DCC970, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{1599} normal block at 0x00000200E9DCD070, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1588} normal block at 0x00000200E9DCCCF0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{1557} normal block at 0x00000200E9DBD9A0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {1544} normal block at 0x00000200E9DD4D20, 8 bytes long.
 Data: <        > 00 00 D6 E9 00 02 00 00 
{312} normal block at 0x00000200E9DD4E60, 8 bytes long.
 Data: <0X      > 30 58 DD E9 00 02 00 00 
{303} normal block at 0x00000200E9DBBC10, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{302} normal block at 0x00000200E9DD4230, 16 bytes long.
 Data: <8W              > 38 57 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{301} normal block at 0x00000200E9DD4960, 16 bytes long.
 Data: < W              > 10 57 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{300} normal block at 0x00000200E9DD0770, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{299} normal block at 0x00000200E9DD4140, 16 bytes long.
 Data: < V              > E8 56 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x00000200E9DD40F0, 16 bytes long.
 Data: < V              > C0 56 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x00000200E9DD45F0, 16 bytes long.
 Data: < V              > 98 56 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x00000200E9DD40A0, 16 bytes long.
 Data: <pV              > 70 56 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x00000200E9DCCAC0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{294} normal block at 0x00000200E9DD4280, 16 bytes long.
 Data: < >              > E8 3E DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x00000200E9DD0290, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{292} normal block at 0x00000200E9DD4910, 16 bytes long.
 Data: < >              > C0 3E DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x00000200E9DD4FA0, 16 bytes long.
 Data: < >              > 98 3E DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x00000200E9DD48C0, 16 bytes long.
 Data: <p>              > 70 3E DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x00000200E9DD4190, 16 bytes long.
 Data: <H>              > 48 3E DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x00000200E9DD45A0, 16 bytes long.
 Data: < >              > 20 3E DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x00000200E9DD4410, 16 bytes long.
 Data: < =              > F8 3D DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x00000200E9DCFAB0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{284} normal block at 0x00000200E9DD4820, 16 bytes long.
 Data: < =              > D0 3D DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x00000200E9DD3DD0, 320 bytes long.
 Data: < H              > 20 48 DD E9 00 02 00 00 B0 FA DC E9 00 02 00 00 
{282} normal block at 0x00000200E9DD4F50, 16 bytes long.
 Data: <PV              > 50 56 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x00000200E9DD4A50, 16 bytes long.
 Data: <(V              > 28 56 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x00000200E9DCFF30, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{279} normal block at 0x00000200E9DD4F00, 16 bytes long.
 Data: < V              > 00 56 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x00000200E9DCFD50, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{277} normal block at 0x00000200E9DD4CD0, 16 bytes long.
 Data: <HU              > 48 55 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x00000200E9DD47D0, 16 bytes long.
 Data: < U              > 20 55 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x00000200E9DD4EB0, 16 bytes long.
 Data: < T              > F8 54 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x00000200E9DD4C80, 16 bytes long.
 Data: < T              > D0 54 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x00000200E9DD4550, 16 bytes long.
 Data: < T              > A8 54 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x00000200E9DD4C30, 16 bytes long.
 Data: < T              > 80 54 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x00000200E9DD4730, 16 bytes long.
 Data: <                > 20 CF DC E9 00 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x00000200E9DCCF20, 40 bytes long.
 Data: <0G              > 30 47 DD E9 00 02 00 00 A0 D9 DB E9 00 02 00 00 
{268} normal block at 0x00000200E9DD4AF0, 16 bytes long.
 Data: <`T              > 60 54 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x00000200E9DD4E10, 16 bytes long.
 Data: <8T              > 38 54 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x00000200E9DCF8D0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{265} normal block at 0x00000200E9DD4DC0, 16 bytes long.
 Data: < T              > 10 54 DD E9 00 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x00000200E9DD5410, 992 bytes long.
 Data: < M              > C0 4D DD E9 00 02 00 00 D0 F8 DC E9 00 02 00 00 
{100} normal block at 0x00000200E9DCFC90, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{99} normal block at 0x00000200E9DC83B0, 16 bytes long.
 Data: <                > 80 CC DC E9 00 02 00 00 00 00 00 00 00 00 00 00 
{98} normal block at 0x00000200E9DCCC80, 40 bytes long.
 Data: <                > B0 83 DC E9 00 02 00 00 90 FC DC E9 00 02 00 00 
{77} normal block at 0x00000200E9DC7FF0, 16 bytes long.
 Data: <   v            > 80 EA 05 76 F6 7F 00 00 00 00 00 00 00 00 00 00 
{76} normal block at 0x00000200E9DC8AE0, 16 bytes long.
 Data: <@  v            > 40 E9 05 76 F6 7F 00 00 00 00 00 00 00 00 00 00 
{75} normal block at 0x00000200E9DC8A40, 16 bytes long.
 Data: < W v            > F8 57 02 76 F6 7F 00 00 00 00 00 00 00 00 00 00 
{74} normal block at 0x00000200E9DC7EB0, 16 bytes long.
 Data: < W v            > D8 57 02 76 F6 7F 00 00 00 00 00 00 00 00 00 00 
{73} normal block at 0x00000200E9DC89F0, 16 bytes long.
 Data: <P  v            > 50 04 02 76 F6 7F 00 00 00 00 00 00 00 00 00 00 
{72} normal block at 0x00000200E9DC84F0, 16 bytes long.
 Data: <0  v            > 30 04 02 76 F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x00000200E9DC8B30, 16 bytes long.
 Data: <   v            > E0 02 02 76 F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x00000200E9DC7E10, 16 bytes long.
 Data: <   v            > 10 04 02 76 F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x00000200E9DC87C0, 16 bytes long.
 Data: <p  v            > 70 04 02 76 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x00000200E9DC84A0, 16 bytes long.
 Data: <   v            > 18 C0 00 76 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


©2026 Universitat Pompeu Fabra