Task 38645179

Name tnks2_A23_A13_r0_4-QUICO_ATM_OpenFF23_NAGL_tnks2-5-6-RND7725_0
Workunit 31590203
Created 13 May 2026, 23:29:51 UTC
Sent 13 May 2026, 23:29:55 UTC
Report deadline 18 May 2026, 23:29:55 UTC
Received 14 May 2026, 4:25:18 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 630776
Run time 4 hours 40 min 33 sec
CPU time 4 hours 40 min 33 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 20,050.01 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 885.67 MB
Peak swap size 12.71 GB
Peak disk usage 2.95 GB

Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
18:32:40 (27872): wrapper (7.9.26016): starting
18:32:40 (27872): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A23_A13_0.pdb
QB_A23_A13_0.xml
QB_A23_A13.inpcrd
QB_A23_A13_input.yaml
QB_A23_A13.pdb
QB_A23_A13.prmtop
QB_A23_A13_sys.xml
run.bat
run.sh
18:32:42 (27872): Library/usr/bin/tar.exe exited; CPU time 0.015625
18:32:42 (27872): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\5\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\5\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
23:24:38 (27872): C:/Windows/system32/cmd.exe exited; CPU time 16833.218750
23:24:38 (27872): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 328942171 bytes.
Dumping objects ->
{3835445} normal block at 0x000001C754BE55B0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835434} normal block at 0x000001C754BE4A50, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835423} normal block at 0x000001C752EE56C0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835412} normal block at 0x000001C752EE55E0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835401} normal block at 0x000001C752EE5570, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835370} normal block at 0x000001C754B88E90, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835357} normal block at 0x000001C752EDBCB0, 8 bytes long.
 Data: <  &#232;R&#199;   > 00 00 E8 52 C7 01 00 00 
{3833973} normal block at 0x000001C752EDC070, 8 bytes long.
 Data: < Z&#193;T&#199;   > 80 5A C1 54 C7 01 00 00 
..\zip\boinc_zip.cpp(122) : {318} normal block at 0x000001C752ED6F60, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{303} normal block at 0x000001C752ED8690, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{302} normal block at 0x000001C752EE6570, 16 bytes long.
 Data: <(v&#238;R&#199;           > 28 76 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{301} normal block at 0x000001C752EE7150, 16 bytes long.
 Data: < v&#238;R&#199;           > 00 76 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{300} normal block at 0x000001C752EE25E0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{299} normal block at 0x000001C752EE7100, 16 bytes long.
 Data: <&#216;u&#238;R&#199;           > D8 75 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x000001C752EE6520, 16 bytes long.
 Data: <&#176;u&#238;R&#199;           > B0 75 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x000001C752EE64D0, 16 bytes long.
 Data: < u&#238;R&#199;           > 88 75 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x000001C752EE6ED0, 16 bytes long.
 Data: <`u&#238;R&#199;           > 60 75 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x000001C752EE5960, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{294} normal block at 0x000001C752EE6E80, 16 bytes long.
 Data: <&#216;&#206;&#236;R&#199;           > D8 CE EC 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000001C752EE2460, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{292} normal block at 0x000001C752EE7290, 16 bytes long.
 Data: <&#176;&#206;&#236;R&#199;           > B0 CE EC 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000001C752EE6E30, 16 bytes long.
 Data: < &#206;&#236;R&#199;           > 88 CE EC 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000001C752EE6F70, 16 bytes long.
 Data: <`&#206;&#236;R&#199;           > 60 CE EC 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000001C752EE6430, 16 bytes long.
 Data: <8&#206;&#236;R&#199;           > 38 CE EC 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000001C752EE6CA0, 16 bytes long.
 Data: < &#206;&#236;R&#199;           > 10 CE EC 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000001C752EE7240, 16 bytes long.
 Data: <&#232;&#205;&#236;R&#199;           > E8 CD EC 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000001C752EE24C0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{284} normal block at 0x000001C752EE6C50, 16 bytes long.
 Data: <&#192;&#205;&#236;R&#199;           > C0 CD EC 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000001C752ECCDC0, 320 bytes long.
 Data: <Pl&#238;R&#199;   &#192;$&#238;R&#199;   > 50 6C EE 52 C7 01 00 00 C0 24 EE 52 C7 01 00 00 
{282} normal block at 0x000001C752EE71F0, 16 bytes long.
 Data: <@u&#238;R&#199;           > 40 75 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000001C752EE6BB0, 16 bytes long.
 Data: < u&#238;R&#199;           > 18 75 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001C752EE2700, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{279} normal block at 0x000001C752EE68E0, 16 bytes long.
 Data: <&#240;t&#238;R&#199;           > F0 74 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000001C752EE2580, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{277} normal block at 0x000001C752EE63E0, 16 bytes long.
 Data: <8t&#238;R&#199;           > 38 74 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000001C752EE6340, 16 bytes long.
 Data: < t&#238;R&#199;           > 10 74 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000001C752EE6A20, 16 bytes long.
 Data: <&#232;s&#238;R&#199;           > E8 73 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x000001C752EE6B60, 16 bytes long.
 Data: <&#192;s&#238;R&#199;           > C0 73 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000001C752EE6660, 16 bytes long.
 Data: < s&#238;R&#199;           > 98 73 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000001C752EE6DE0, 16 bytes long.
 Data: <ps&#238;R&#199;           > 70 73 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000001C752EE67A0, 16 bytes long.
 Data: <0W&#238;R&#199;           > 30 57 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000001C752EE5730, 40 bytes long.
 Data: <&#160;g&#238;R&#199;    &#142;&#184;T&#199;   > A0 67 EE 52 C7 01 00 00 90 8E B8 54 C7 01 00 00 
{268} normal block at 0x000001C752EE7010, 16 bytes long.
 Data: <Ps&#238;R&#199;           > 50 73 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000001C752EE6D90, 16 bytes long.
 Data: <(s&#238;R&#199;           > 28 73 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000001C752EE2400, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{265} normal block at 0x000001C752EE6B10, 16 bytes long.
 Data: < s&#238;R&#199;           > 00 73 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000001C752EE7300, 992 bytes long.
 Data: < k&#238;R&#199;    $&#238;R&#199;   > 10 6B EE 52 C7 01 00 00 00 24 EE 52 C7 01 00 00 
{100} normal block at 0x000001C752EE2C40, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{99} normal block at 0x000001C752EDC110, 16 bytes long.
 Data: <PV&#238;R&#199;           > 50 56 EE 52 C7 01 00 00 00 00 00 00 00 00 00 00 
{98} normal block at 0x000001C752EE5650, 40 bytes long.
 Data: < &#193;&#237;R&#199;   @,&#238;R&#199;   > 10 C1 ED 52 C7 01 00 00 40 2C EE 52 C7 01 00 00 
{77} normal block at 0x000001C752EDC2F0, 16 bytes long.
 Data: < &#234;Zj&#247;           > 80 EA 5A 6A F7 7F 00 00 00 00 00 00 00 00 00 00 
{76} normal block at 0x000001C752EDBEE0, 16 bytes long.
 Data: <@&#233;Zj&#247;           > 40 E9 5A 6A F7 7F 00 00 00 00 00 00 00 00 00 00 
{75} normal block at 0x000001C752EDCBB0, 16 bytes long.
 Data: <&#248;WWj&#247;           > F8 57 57 6A F7 7F 00 00 00 00 00 00 00 00 00 00 
{74} normal block at 0x000001C752EDC7A0, 16 bytes long.
 Data: <&#216;WWj&#247;           > D8 57 57 6A F7 7F 00 00 00 00 00 00 00 00 00 00 
{73} normal block at 0x000001C752EDBFD0, 16 bytes long.
 Data: <P Wj&#247;           > 50 04 57 6A F7 7F 00 00 00 00 00 00 00 00 00 00 
{72} normal block at 0x000001C752EDC5C0, 16 bytes long.
 Data: <0 Wj&#247;           > 30 04 57 6A F7 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x000001C752EDCC00, 16 bytes long.
 Data: <&#224; Wj&#247;           > E0 02 57 6A F7 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x000001C752EDCA70, 16 bytes long.
 Data: <  Wj&#247;           > 10 04 57 6A F7 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000001C752EDCA20, 16 bytes long.
 Data: <p Wj&#247;           > 70 04 57 6A F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000001C752EDC430, 16 bytes long.
 Data: < &#192;Uj&#247;           > 18 C0 55 6A F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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