Task 38645153

Name shp2_A26_A23_r0_2-QUICO_ATM_OpenFF23_NAGL_shp2-0-6-RND7135_6
Workunit 31589771
Created 13 May 2026, 12:33:53 UTC
Sent 13 May 2026, 12:33:57 UTC
Report deadline 18 May 2026, 12:33:57 UTC
Received 13 May 2026, 15:54:12 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 195 (0x000000C3) EXIT_CHILD_FAILED
Computer ID 484079
Run time 2 hours 59 min
CPU time 2 hours 51 min 48 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 4,378.81 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 698.26 MB
Peak swap size 2.30 GB
Peak disk usage 4.15 GB

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
 (0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
14:55:29 (7468): wrapper (7.9.26016): starting
14:55:29 (7468): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A26_A23_0.pdb
QB_A26_A23_0.xml
QB_A26_A23.inpcrd
QB_A26_A23_input.yaml
QB_A26_A23.pdb
QB_A26_A23.prmtop
QB_A26_A23_sys.xml
run.bat
run.sh
14:55:31 (7468): Library/usr/bin/tar.exe exited; CPU time 0.000000
14:55:31 (7468): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Traceback (most recent call last):
  File "<frozen runpy>", line 198, in _run_module_as_main
  File "<frozen runpy>", line 88, in _run_code
  File "C:\ProgramData\BOINC\slots\0\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
    rx.scheduleJobs()
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
    self.transport.ProcessJobQueue(min_time,cycle_time)
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
    self.isDone(repl,0)
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
    retcode = self._update_replica(job)
              ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
    pot = job['openmm_worker'].get_energy()
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
    return self._worker_getenergy()
           ^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
    state = self.simulation.context.getState(getEnergy = True)
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\openmm\openmm.py", line 5022, in getState
    state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN.  For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
17:52:46 (7468): C:/Windows/system32/cmd.exe exited; CPU time 10308.859375
17:52:46 (7468): app exit status: 0x16
17:52:46 (7468): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 124271327 bytes.
Dumping objects ->
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{3835163} normal block at 0x0000026FF1860F40, 48 bytes long.
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{3835110} normal block at 0x0000026FF198CC10, 64 bytes long.
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{281} normal block at 0x0000026FEFE23FC0, 16 bytes long.
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{280} normal block at 0x0000026FEFE1C730, 32 bytes long.
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{279} normal block at 0x0000026FEFE23840, 16 bytes long.
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{277} normal block at 0x0000026FEFE23B10, 16 bytes long.
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{276} normal block at 0x0000026FEFE23DE0, 16 bytes long.
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{273} normal block at 0x0000026FEFE23700, 16 bytes long.
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{272} normal block at 0x0000026FEFE1C790, 32 bytes long.
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{271} normal block at 0x0000026FEFE23F70, 16 bytes long.
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{268} normal block at 0x0000026FEFE23250, 16 bytes long.
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{263} normal block at 0x0000026FEFE23200, 16 bytes long.
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{262} normal block at 0x0000026FEFE23CF0, 16 bytes long.
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{255} normal block at 0x0000026FEFE23F20, 16 bytes long.
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{254} normal block at 0x0000026FEFE230C0, 16 bytes long.
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{253} normal block at 0x0000026FEFE1C0D0, 32 bytes long.
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{87} normal block at 0x0000026FEFE1BD70, 32 bytes long.
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{64} normal block at 0x0000026FEFE167A0, 16 bytes long.
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{62} normal block at 0x0000026FEFE15EE0, 16 bytes long.
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{61} normal block at 0x0000026FEFE15B20, 16 bytes long.
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{60} normal block at 0x0000026FEFE15E90, 16 bytes long.
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{59} normal block at 0x0000026FEFE16430, 16 bytes long.
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{58} normal block at 0x0000026FEFE15E40, 16 bytes long.
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{57} normal block at 0x0000026FEFE164D0, 16 bytes long.
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{56} normal block at 0x0000026FEFE16020, 16 bytes long.
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{55} normal block at 0x0000026FEFE16250, 16 bytes long.
 Data: < &#192;  &#247;           > 18 C0 1E 1E F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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