Task 38644792
| Name | shp2_A01_A13_r0_2-QUICO_ATM_OpenFF23_NAGL_shp2-0-6-RND2167_7 |
| Workunit | 31589595 |
| Created | 9 May 2026, 16:08:47 UTC |
| Sent | 9 May 2026, 16:08:53 UTC |
| Report deadline | 14 May 2026, 16:08:53 UTC |
| Received | 9 May 2026, 17:11:19 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 619022 |
| Run time | 11 min 13 sec |
| CPU time | 9 min 20 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 35,334.17 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 791.85 MB |
| Peak swap size | 7.14 GB |
| Peak disk usage | 2.81 GB |
Stderr output
<core_client_version>8.0.2</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
09:59:36 (2308): wrapper (7.9.26016): starting
09:59:36 (2308): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A01_A13_0.pdb
QB_A01_A13_0.xml
QB_A01_A13.inpcrd
QB_A01_A13_input.yaml
QB_A01_A13.pdb
QB_A01_A13.prmtop
QB_A01_A13_sys.xml
run.bat
run.sh
09:59:40 (2308): Library/usr/bin/tar.exe exited; CPU time 0.000000
09:59:40 (2308): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\4\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\4\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "C:\ProgramData\BOINC\slots\4\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "C:\ProgramData\BOINC\slots\4\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "C:\ProgramData\BOINC\slots\4\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "C:\ProgramData\BOINC\slots\4\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "C:\ProgramData\BOINC\slots\4\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\4\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\4\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\4\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\4\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
10:10:25 (2308): C:/Windows/system32/cmd.exe exited; CPU time 560.062500
10:10:25 (2308): app exit status: 0x16
10:10:25 (2308): called boinc_finish(195)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 7459557 bytes.
Dumping objects ->
{3835310} normal block at 0x000001B13BFADF10, 48 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835299} normal block at 0x000001B13A4048C0, 48 bytes long.
Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835288} normal block at 0x000001B13A404850, 48 bytes long.
Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61
{3835277} normal block at 0x000001B13A4047E0, 48 bytes long.
Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835266} normal block at 0x000001B13A404BD0, 48 bytes long.
Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61
{3835235} normal block at 0x000001B13BFFC890, 64 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835224} normal block at 0x000001B13C00FD70, 102 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
..\api\boinc_api.cpp(309) : {3835221} normal block at 0x000001B13A3FA490, 8 bytes long.
Data: < <:± > 00 00 3C 3A B1 01 00 00
{3834573} normal block at 0x000001B13C00F480, 102 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
{3833959} normal block at 0x000001B13A3FA6C0, 8 bytes long.
Data: <°² <± > B0 B2 00 3C B1 01 00 00
..\zip\boinc_zip.cpp(122) : {311} normal block at 0x000001B13A4012B0, 260 bytes long.
Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
{296} normal block at 0x000001B13A3F5C80, 80 bytes long.
Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C
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Data: <`e@:± > 60 65 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{293} normal block at 0x000001B13A3FFAC0, 32 bytes long.
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{292} normal block at 0x000001B13A405610, 16 bytes long.
Data: <8e@:± > 38 65 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{291} normal block at 0x000001B13A405E80, 16 bytes long.
Data: < e@:± > 10 65 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{290} normal block at 0x000001B13A405D90, 16 bytes long.
Data: <èd@:± > E8 64 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{289} normal block at 0x000001B13A4057A0, 16 bytes long.
Data: <Àd@:± > C0 64 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{288} normal block at 0x000001B13A404A10, 48 bytes long.
Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F
{287} normal block at 0x000001B13A405750, 16 bytes long.
Data: < ì>:± > 98 EC 3E 3A B1 01 00 00 00 00 00 00 00 00 00 00
{286} normal block at 0x000001B13A3FFE80, 32 bytes long.
Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69
{285} normal block at 0x000001B13A405520, 16 bytes long.
Data: <pì>:± > 70 EC 3E 3A B1 01 00 00 00 00 00 00 00 00 00 00
{283} normal block at 0x000001B13A405BB0, 16 bytes long.
Data: <Hì>:± > 48 EC 3E 3A B1 01 00 00 00 00 00 00 00 00 00 00
{282} normal block at 0x000001B13A405CA0, 16 bytes long.
Data: < ì>:± > 20 EC 3E 3A B1 01 00 00 00 00 00 00 00 00 00 00
{281} normal block at 0x000001B13A405570, 16 bytes long.
Data: <øë>:± > F8 EB 3E 3A B1 01 00 00 00 00 00 00 00 00 00 00
{280} normal block at 0x000001B13A405D40, 16 bytes long.
Data: <Ðë>:± > D0 EB 3E 3A B1 01 00 00 00 00 00 00 00 00 00 00
{279} normal block at 0x000001B13A405AC0, 16 bytes long.
Data: <¨ë>:± > A8 EB 3E 3A B1 01 00 00 00 00 00 00 00 00 00 00
{278} normal block at 0x000001B13A400240, 32 bytes long.
Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55
{277} normal block at 0x000001B13A405480, 16 bytes long.
Data: < ë>:± > 80 EB 3E 3A B1 01 00 00 00 00 00 00 00 00 00 00
{276} normal block at 0x000001B13A3EEB80, 320 bytes long.
Data: < T@:± @ @:± > 80 54 40 3A B1 01 00 00 40 02 40 3A B1 01 00 00
{275} normal block at 0x000001B13A405340, 16 bytes long.
Data: < d@:± > A0 64 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{274} normal block at 0x000001B13A405CF0, 16 bytes long.
Data: <xd@:± > 78 64 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{273} normal block at 0x000001B13A400480, 32 bytes long.
Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65
{272} normal block at 0x000001B13A4052F0, 16 bytes long.
Data: <Pd@:± > 50 64 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{271} normal block at 0x000001B13A400420, 32 bytes long.
Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62
{270} normal block at 0x000001B13A4053E0, 16 bytes long.
Data: < c@:± > 98 63 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{269} normal block at 0x000001B13A4056B0, 16 bytes long.
Data: <pc@:± > 70 63 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{268} normal block at 0x000001B13A405C00, 16 bytes long.
Data: <Hc@:± > 48 63 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{267} normal block at 0x000001B13A4061A0, 16 bytes long.
Data: < c@:± > 20 63 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{266} normal block at 0x000001B13A405C50, 16 bytes long.
Data: <øb@:± > F8 62 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{265} normal block at 0x000001B13A405390, 16 bytes long.
Data: <Ðb@:± > D0 62 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{263} normal block at 0x000001B13A405E30, 16 bytes long.
Data: < M@:± > 20 4D 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{262} normal block at 0x000001B13A404D20, 40 bytes long.
Data: <0^@:± Èÿ;± > 30 5E 40 3A B1 01 00 00 90 C8 FF 3B B1 01 00 00
{261} normal block at 0x000001B13A405660, 16 bytes long.
Data: <°b@:± > B0 62 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{260} normal block at 0x000001B13A405980, 16 bytes long.
Data: < b@:± > 88 62 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{259} normal block at 0x000001B13A4000C0, 32 bytes long.
Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
{258} normal block at 0x000001B13A405DE0, 16 bytes long.
Data: <`b@:± > 60 62 40 3A B1 01 00 00 00 00 00 00 00 00 00 00
{257} normal block at 0x000001B13A406260, 992 bytes long.
Data: <à]@:± À @:± > E0 5D 40 3A B1 01 00 00 C0 00 40 3A B1 01 00 00
{93} normal block at 0x000001B13A3FFE20, 32 bytes long.
Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
{92} normal block at 0x000001B13A3FA350, 16 bytes long.
Data: < ë>:± > 10 EB 3E 3A B1 01 00 00 00 00 00 00 00 00 00 00
{91} normal block at 0x000001B13A3EEB10, 40 bytes long.
Data: <P£?:± þ?:± > 50 A3 3F 3A B1 01 00 00 20 FE 3F 3A B1 01 00 00
{70} normal block at 0x000001B13A3FA210, 16 bytes long.
Data: < êÎËö > 80 EA CE CB F6 7F 00 00 00 00 00 00 00 00 00 00
{69} normal block at 0x000001B13A3FAEE0, 16 bytes long.
Data: <@éÎËö > 40 E9 CE CB F6 7F 00 00 00 00 00 00 00 00 00 00
{68} normal block at 0x000001B13A3FAE40, 16 bytes long.
Data: <øWËËö > F8 57 CB CB F6 7F 00 00 00 00 00 00 00 00 00 00
{67} normal block at 0x000001B13A3FA440, 16 bytes long.
Data: <ØWËËö > D8 57 CB CB F6 7F 00 00 00 00 00 00 00 00 00 00
{66} normal block at 0x000001B13A3FA8A0, 16 bytes long.
Data: <P ËËö > 50 04 CB CB F6 7F 00 00 00 00 00 00 00 00 00 00
{65} normal block at 0x000001B13A3FA300, 16 bytes long.
Data: <0 ËËö > 30 04 CB CB F6 7F 00 00 00 00 00 00 00 00 00 00
{64} normal block at 0x000001B13A3FAAD0, 16 bytes long.
Data: <à ËËö > E0 02 CB CB F6 7F 00 00 00 00 00 00 00 00 00 00
{63} normal block at 0x000001B13A3FB110, 16 bytes long.
Data: < ËËö > 10 04 CB CB F6 7F 00 00 00 00 00 00 00 00 00 00
{62} normal block at 0x000001B13A3FA5D0, 16 bytes long.
Data: <p ËËö > 70 04 CB CB F6 7F 00 00 00 00 00 00 00 00 00 00
{61} normal block at 0x000001B13A3FA580, 16 bytes long.
Data: < ÀÉËö > 18 C0 C9 CB F6 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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