Task 38644784
| Name | shp2_A20_A09_r0_2-QUICO_ATM_OpenFF23_NAGL_shp2-0-6-RND5781_9 |
| Workunit | 31589690 |
| Created | 9 May 2026, 14:56:54 UTC |
| Sent | 9 May 2026, 14:56:55 UTC |
| Report deadline | 14 May 2026, 14:56:55 UTC |
| Received | 9 May 2026, 23:38:18 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 615733 |
| Run time | 4 min 19 sec |
| CPU time | 2 min 11 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 13,483.55 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 742.34 MB |
| Peak swap size | 6.98 GB |
| Peak disk usage | 1.52 GB |
Stderr output
<core_client_version>8.2.11</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
18:33:34 (43768): wrapper (7.9.26016): starting
18:33:34 (43768): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A20_A09_0.pdb
QB_A20_A09_0.xml
QB_A20_A09.inpcrd
QB_A20_A09_input.yaml
QB_A20_A09.pdb
QB_A20_A09.prmtop
QB_A20_A09_sys.xml
run.bat
run.sh
18:33:37 (43768): Library/usr/bin/tar.exe exited; CPU time 0.015625
18:33:37 (43768): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'Z:\BOINCdata\slots\4\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'Z:\BOINCdata\slots\4\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "Z:\BOINCdata\slots\4\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "Z:\BOINCdata\slots\4\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "Z:\BOINCdata\slots\4\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "Z:\BOINCdata\slots\4\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "Z:\BOINCdata\slots\4\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "Z:\BOINCdata\slots\4\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "Z:\BOINCdata\slots\4\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "Z:\BOINCdata\slots\4\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "Z:\BOINCdata\slots\4\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
18:36:27 (43768): C:/Windows/system32/cmd.exe exited; CPU time 131.265625
18:36:27 (43768): app exit status: 0x16
18:36:27 (43768): called boinc_finish(195)
0 bytes in 0 Free Blocks.
176 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 3047885 bytes.
Dumping objects ->
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{3835263} normal block at 0x0000025B8C831D80, 32 bytes long.
Data: <TEMP=Z:\BOINCdat> 54 45 4D 50 3D 5A 3A 5C 42 4F 49 4E 43 64 61 74
{3835252} normal block at 0x0000025B8C832140, 32 bytes long.
Data: <TMPDIR=Z:\BOINCd> 54 4D 50 44 49 52 3D 5A 3A 5C 42 4F 49 4E 43 64
{3835221} normal block at 0x0000025B8AB85430, 48 bytes long.
Data: <PATH=Z:\BOINCdat> 50 41 54 48 3D 5A 3A 5C 42 4F 49 4E 43 64 61 74
..\api\boinc_api.cpp(309) : {3835208} normal block at 0x0000025B8AB7DE20, 8 bytes long.
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{3833953} normal block at 0x0000025B8AB7E0A0, 8 bytes long.
Data: < Û¶Š[ > 00 DB B6 8A 5B 02 00 00
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Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
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{276} normal block at 0x0000025B8AB86B70, 16 bytes long.
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{275} normal block at 0x0000025B8AB7FDD0, 32 bytes long.
Data: <CUDA_DEVICE=1 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 31 00 50 55
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{90} normal block at 0x0000025B8AB801F0, 32 bytes long.
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{63} normal block at 0x0000025B8AB7E000, 16 bytes long.
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{59} normal block at 0x0000025B8AB7E0F0, 16 bytes long.
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{58} normal block at 0x0000025B8AB7DA10, 16 bytes long.
Data: < Àùóö > 18 C0 F9 F3 F6 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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