Task 38644355

Name p38_3_A16_A08_r0_1-QUICO_ATM_OpenFF_NAGL_p38_3-5-6-RND3909_1
Workunit 31589943
Created 8 May 2026, 13:54:35 UTC
Sent 8 May 2026, 13:54:36 UTC
Report deadline 13 May 2026, 13:54:36 UTC
Received 8 May 2026, 20:11:41 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 648092
Run time 3 hours 40 min 37 sec
CPU time 3 hours 40 min 37 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 35,706.26 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 667.66 MB
Peak swap size 12.97 GB
Peak disk usage 3.08 GB

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
11:29:30 (10976): wrapper (7.9.26016): starting
11:29:30 (10976): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A16_A08_0.pdb
QB_A16_A08_0.xml
QB_A16_A08.inpcrd
QB_A16_A08_input.yaml
QB_A16_A08.pdb
QB_A16_A08.prmtop
QB_A16_A08_sys.xml
run.bat
run.sh
11:29:31 (10976): Library/usr/bin/tar.exe exited; CPU time 0.000000
11:29:31 (10976): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
15:01:50 (10976): C:/Windows/system32/cmd.exe exited; CPU time 13237.843750
15:01:50 (10976): called boinc_finish(0)
0 bytes in 0 Free Blocks.
726 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 146328389 bytes.
Dumping objects ->
{3835567} normal block at 0x0000019FEFF73D10, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835556} normal block at 0x0000019FEFF73CA0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835545} normal block at 0x0000019FEFF74020, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835534} normal block at 0x0000019FEFF73ED0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835523} normal block at 0x0000019FEFF73FB0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835492} normal block at 0x0000019FF1CDAAF0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835481} normal block at 0x0000019FF004E520, 235 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835478} normal block at 0x0000019FEFF6D140, 8 bytes long.
 Data: <  &#243;&#239;&#159;   > 00 00 F3 EF 9F 01 00 00 
{3834701} normal block at 0x0000019FF1D35D50, 235 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833953} normal block at 0x0000019FEFF6D550, 8 bytes long.
 Data: < &#213;&#245;&#239;&#159;   > 20 D5 F5 EF 9F 01 00 00 
..\zip\boinc_zip.cpp(122) : {308} normal block at 0x0000019FEFF60910, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x0000019FEFF620C0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{292} normal block at 0x0000019FEFF75640, 16 bytes long.
 Data: <&#200;^&#247;&#239;&#159;           > C8 5E F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000019FEFF74A10, 16 bytes long.
 Data: <&#160;^&#247;&#239;&#159;           > A0 5E F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000019FEFF70BC0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{289} normal block at 0x0000019FEFF75140, 16 bytes long.
 Data: <x^&#247;&#239;&#159;           > 78 5E F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x0000019FEFF74FB0, 16 bytes long.
 Data: <P^&#247;&#239;&#159;           > 50 5E F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000019FEFF750A0, 16 bytes long.
 Data: <(^&#247;&#239;&#159;           > 28 5E F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x0000019FEFF74C90, 16 bytes long.
 Data: < ^&#247;&#239;&#159;           > 00 5E F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000019FEFF5EBF0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{284} normal block at 0x0000019FEFF74F60, 16 bytes long.
 Data: <8&#252;&#245;&#239;&#159;           > 38 FC F5 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000019FEFF70F80, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{282} normal block at 0x0000019FEFF747E0, 16 bytes long.
 Data: < &#252;&#245;&#239;&#159;           > 10 FC F5 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000019FEFF751E0, 16 bytes long.
 Data: <&#232;&#251;&#245;&#239;&#159;           > E8 FB F5 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000019FEFF74920, 16 bytes long.
 Data: <&#192;&#251;&#245;&#239;&#159;           > C0 FB F5 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000019FEFF75190, 16 bytes long.
 Data: < &#251;&#245;&#239;&#159;           > 98 FB F5 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x0000019FEFF74830, 16 bytes long.
 Data: <p&#251;&#245;&#239;&#159;           > 70 FB F5 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000019FEFF755F0, 16 bytes long.
 Data: <H&#251;&#245;&#239;&#159;           > 48 FB F5 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000019FEFF71100, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{274} normal block at 0x0000019FEFF74B00, 16 bytes long.
 Data: < &#251;&#245;&#239;&#159;           > 20 FB F5 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x0000019FEFF5FB20, 320 bytes long.
 Data: < K&#247;&#239;&#159;     &#247;&#239;&#159;   > 00 4B F7 EF 9F 01 00 00 00 11 F7 EF 9F 01 00 00 
{272} normal block at 0x0000019FEFF75500, 16 bytes long.
 Data: <&#224;]&#247;&#239;&#159;           > E0 5D F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x0000019FEFF74E70, 16 bytes long.
 Data: <&#184;]&#247;&#239;&#159;           > B8 5D F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000019FEFF70440, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{269} normal block at 0x0000019FEFF752D0, 16 bytes long.
 Data: < ]&#247;&#239;&#159;           > 90 5D F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000019FEFF71340, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{267} normal block at 0x0000019FEFF74E20, 16 bytes long.
 Data: <&#216;\&#247;&#239;&#159;           > D8 5C F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x0000019FEFF756E0, 16 bytes long.
 Data: <&#176;\&#247;&#239;&#159;           > B0 5C F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000019FEFF750F0, 16 bytes long.
 Data: < \&#247;&#239;&#159;           > 88 5C F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000019FEFF74BA0, 16 bytes long.
 Data: <`\&#247;&#239;&#159;           > 60 5C F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x0000019FEFF748D0, 16 bytes long.
 Data: <8\&#247;&#239;&#159;           > 38 5C F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000019FEFF74BF0, 16 bytes long.
 Data: < \&#247;&#239;&#159;           > 10 5C F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x0000019FEFF74D30, 16 bytes long.
 Data: <`&#236;&#245;&#239;&#159;           > 60 EC F5 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x0000019FEFF5EC60, 40 bytes long.
 Data: <0M&#247;&#239;&#159;   &#240;&#170;&#205;&#241;&#159;   > 30 4D F7 EF 9F 01 00 00 F0 AA CD F1 9F 01 00 00 
{258} normal block at 0x0000019FEFF74F10, 16 bytes long.
 Data: <&#240;[&#247;&#239;&#159;           > F0 5B F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x0000019FEFF75690, 16 bytes long.
 Data: <&#200;[&#247;&#239;&#159;           > C8 5B F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x0000019FEFF705C0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{255} normal block at 0x0000019FEFF753C0, 16 bytes long.
 Data: <&#160;[&#247;&#239;&#159;           > A0 5B F7 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{254} normal block at 0x0000019FEFF75BA0, 992 bytes long.
 Data: <&#192;S&#247;&#239;&#159;   &#192; &#247;&#239;&#159;   > C0 53 F7 EF 9F 01 00 00 C0 05 F7 EF 9F 01 00 00 
{90} normal block at 0x0000019FEFF70C20, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{89} normal block at 0x0000019FEFF6D500, 16 bytes long.
 Data: < &#196;&#245;&#239;&#159;           > 20 C4 F5 EF 9F 01 00 00 00 00 00 00 00 00 00 00 
{88} normal block at 0x0000019FEFF5C420, 40 bytes long.
 Data: < &#213;&#246;&#239;&#159;     &#247;&#239;&#159;   > 00 D5 F6 EF 9F 01 00 00 20 0C F7 EF 9F 01 00 00 
{67} normal block at 0x0000019FEFF6D3C0, 16 bytes long.
 Data: < &#234;&#254;&#230;&#246;           > 80 EA FE E6 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000019FEFF6DCD0, 16 bytes long.
 Data: <@&#233;&#254;&#230;&#246;           > 40 E9 FE E6 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000019FEFF6D9B0, 16 bytes long.
 Data: <&#248;W&#251;&#230;&#246;           > F8 57 FB E6 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000019FEFF6D960, 16 bytes long.
 Data: <&#216;W&#251;&#230;&#246;           > D8 57 FB E6 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000019FEFF6D0F0, 16 bytes long.
 Data: <P &#251;&#230;&#246;           > 50 04 FB E6 F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x0000019FEFF6D910, 16 bytes long.
 Data: <0 &#251;&#230;&#246;           > 30 04 FB E6 F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x0000019FEFF6D4B0, 16 bytes long.
 Data: <&#224; &#251;&#230;&#246;           > E0 02 FB E6 F6 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x0000019FEFF6D7D0, 16 bytes long.
 Data: <  &#251;&#230;&#246;           > 10 04 FB E6 F6 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x0000019FEFF6D5F0, 16 bytes long.
 Data: <p &#251;&#230;&#246;           > 70 04 FB E6 F6 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x0000019FEFF6D820, 16 bytes long.
 Data: < &#192;&#249;&#230;&#246;           > 18 C0 F9 E6 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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