Task 38644190
| Name | shp2_A26_A19_r0_1-QUICO_ATM_OpenFF23_NAGL_shp2-0-6-RND6734_2 |
| Workunit | 31589765 |
| Created | 8 May 2026, 7:14:38 UTC |
| Sent | 8 May 2026, 7:14:43 UTC |
| Report deadline | 13 May 2026, 7:14:43 UTC |
| Received | 8 May 2026, 12:36:39 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 651346 |
| Run time | 4 hours 51 min 31 sec |
| CPU time | 4 hours 31 min 6 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 29,331.45 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 849.83 MB |
| Peak swap size | 13.25 GB |
| Peak disk usage | 3.14 GB |
Stderr output
<core_client_version>8.2.9</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
02:45:22 (15456): wrapper (7.9.26016): starting
02:45:22 (15456): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A26_A19_0.pdb
QB_A26_A19_0.xml
QB_A26_A19.inpcrd
QB_A26_A19_input.yaml
QB_A26_A19.pdb
QB_A26_A19.prmtop
QB_A26_A19_sys.xml
run.bat
run.sh
02:45:23 (15456): Library/usr/bin/tar.exe exited; CPU time 0.000000
02:45:23 (15456): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "C:\ProgramData\BOINC\slots\0\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
07:36:20 (15456): C:/Windows/system32/cmd.exe exited; CPU time 16266.500000
07:36:20 (15456): app exit status: 0x16
07:36:20 (15456): called boinc_finish(195)
0 bytes in 0 Free Blocks.
726 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 200274715 bytes.
Dumping objects ->
{3835565} normal block at 0x000001FABA3745C0, 48 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835554} normal block at 0x000001FABA374550, 48 bytes long.
Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835543} normal block at 0x000001FABA373FA0, 48 bytes long.
Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61
{3835532} normal block at 0x000001FABA3742B0, 48 bytes long.
Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835521} normal block at 0x000001FABA374390, 48 bytes long.
Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61
{3835490} normal block at 0x000001FABBFEBCC0, 64 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835479} normal block at 0x000001FABC087460, 235 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
..\api\boinc_api.cpp(309) : {3835476} normal block at 0x000001FABA36DB20, 8 bytes long.
Data: < tºú > 00 00 74 BA FA 01 00 00
{3834699} normal block at 0x000001FABA374810, 235 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
{3833951} normal block at 0x000001FABA36E3E0, 8 bytes long.
Data: < Ô5ºú > 10 D4 35 BA FA 01 00 00
..\zip\boinc_zip.cpp(122) : {307} normal block at 0x000001FABA362820, 260 bytes long.
Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
{292} normal block at 0x000001FABA35F1A0, 80 bytes long.
Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C
{291} normal block at 0x000001FABA374F00, 16 bytes long.
Data: <Ø 7ºú > D8 07 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{290} normal block at 0x000001FABA375D60, 16 bytes long.
Data: <° 7ºú > B0 07 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{289} normal block at 0x000001FABA371BB0, 32 bytes long.
Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D
{288} normal block at 0x000001FABA3754F0, 16 bytes long.
Data: < 7ºú > 88 07 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{287} normal block at 0x000001FABA375B30, 16 bytes long.
Data: <` 7ºú > 60 07 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{286} normal block at 0x000001FABA3753B0, 16 bytes long.
Data: <8 7ºú > 38 07 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{285} normal block at 0x000001FABA375BD0, 16 bytes long.
Data: < 7ºú > 10 07 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{284} normal block at 0x000001FABA35ADC0, 48 bytes long.
Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F
{283} normal block at 0x000001FABA375DB0, 16 bytes long.
Data: <x 6ºú > 78 0D 36 BA FA 01 00 00 00 00 00 00 00 00 00 00
{282} normal block at 0x000001FABA371D30, 32 bytes long.
Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69
{281} normal block at 0x000001FABA3752C0, 16 bytes long.
Data: <P 6ºú > 50 0D 36 BA FA 01 00 00 00 00 00 00 00 00 00 00
{279} normal block at 0x000001FABA375B80, 16 bytes long.
Data: <( 6ºú > 28 0D 36 BA FA 01 00 00 00 00 00 00 00 00 00 00
{278} normal block at 0x000001FABA375E50, 16 bytes long.
Data: < 6ºú > 00 0D 36 BA FA 01 00 00 00 00 00 00 00 00 00 00
{277} normal block at 0x000001FABA375D10, 16 bytes long.
Data: <Ø 6ºú > D8 0C 36 BA FA 01 00 00 00 00 00 00 00 00 00 00
{276} normal block at 0x000001FABA375C70, 16 bytes long.
Data: <° 6ºú > B0 0C 36 BA FA 01 00 00 00 00 00 00 00 00 00 00
{275} normal block at 0x000001FABA375A90, 16 bytes long.
Data: < 6ºú > 88 0C 36 BA FA 01 00 00 00 00 00 00 00 00 00 00
{274} normal block at 0x000001FABA370E30, 32 bytes long.
Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55
{273} normal block at 0x000001FABA374FA0, 16 bytes long.
Data: <` 6ºú > 60 0C 36 BA FA 01 00 00 00 00 00 00 00 00 00 00
{272} normal block at 0x000001FABA360C60, 320 bytes long.
Data: < O7ºú 0 7ºú > A0 4F 37 BA FA 01 00 00 30 0E 37 BA FA 01 00 00
{271} normal block at 0x000001FABA375810, 16 bytes long.
Data: <ð 7ºú > F0 06 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{270} normal block at 0x000001FABA3754A0, 16 bytes long.
Data: <È 7ºú > C8 06 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{269} normal block at 0x000001FABA371A30, 32 bytes long.
Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65
{268} normal block at 0x000001FABA375360, 16 bytes long.
Data: <  7ºú > A0 06 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{267} normal block at 0x000001FABA3711F0, 32 bytes long.
Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62
{266} normal block at 0x000001FABA375AE0, 16 bytes long.
Data: <è 7ºú > E8 05 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{265} normal block at 0x000001FABA3759A0, 16 bytes long.
Data: <À 7ºú > C0 05 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{264} normal block at 0x000001FABA375950, 16 bytes long.
Data: < 7ºú > 98 05 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{263} normal block at 0x000001FABA375A40, 16 bytes long.
Data: <p 7ºú > 70 05 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{262} normal block at 0x000001FABA375900, 16 bytes long.
Data: <H 7ºú > 48 05 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{261} normal block at 0x000001FABA374F50, 16 bytes long.
Data: < 7ºú > 20 05 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{259} normal block at 0x000001FABA375400, 16 bytes long.
Data: <@Ã5ºú > 40 C3 35 BA FA 01 00 00 00 00 00 00 00 00 00 00
{258} normal block at 0x000001FABA35C340, 40 bytes long.
Data: < T7ºú À¼þ»ú > 00 54 37 BA FA 01 00 00 C0 BC FE BB FA 01 00 00
{257} normal block at 0x000001FABA375180, 16 bytes long.
Data: < 7ºú > 00 05 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{256} normal block at 0x000001FABA3751D0, 16 bytes long.
Data: <Ø 7ºú > D8 04 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{255} normal block at 0x000001FABA371250, 32 bytes long.
Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
{254} normal block at 0x000001FABA375040, 16 bytes long.
Data: <° 7ºú > B0 04 37 BA FA 01 00 00 00 00 00 00 00 00 00 00
{253} normal block at 0x000001FABA3704B0, 992 bytes long.
Data: <@P7ºú P 7ºú > 40 50 37 BA FA 01 00 00 50 12 37 BA FA 01 00 00
{89} normal block at 0x000001FABA371A90, 32 bytes long.
Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
{88} normal block at 0x000001FABA36E520, 16 bytes long.
Data: < º5ºú > 00 BA 35 BA FA 01 00 00 00 00 00 00 00 00 00 00
{87} normal block at 0x000001FABA35BA00, 40 bytes long.
Data: < å6ºú 7ºú > 20 E5 36 BA FA 01 00 00 90 1A 37 BA FA 01 00 00
{66} normal block at 0x000001FABA36E8E0, 16 bytes long.
Data: < ê Ò÷ > 80 EA A0 D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{65} normal block at 0x000001FABA36E7A0, 16 bytes long.
Data: <@é Ò÷ > 40 E9 A0 D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{64} normal block at 0x000001FABA36DD50, 16 bytes long.
Data: <øW Ò÷ > F8 57 9D D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{63} normal block at 0x000001FABA36DF80, 16 bytes long.
Data: <ØW Ò÷ > D8 57 9D D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{62} normal block at 0x000001FABA36E840, 16 bytes long.
Data: <P Ò÷ > 50 04 9D D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{61} normal block at 0x000001FABA36DB70, 16 bytes long.
Data: <0 Ò÷ > 30 04 9D D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{60} normal block at 0x000001FABA36D990, 16 bytes long.
Data: <à Ò÷ > E0 02 9D D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{59} normal block at 0x000001FABA36D9E0, 16 bytes long.
Data: < Ò÷ > 10 04 9D D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{58} normal block at 0x000001FABA36DEE0, 16 bytes long.
Data: <p Ò÷ > 70 04 9D D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{57} normal block at 0x000001FABA36E570, 16 bytes long.
Data: < À›Ò÷ > 18 C0 9B D2 F7 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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