Task 38643913
| Name | shp2_A12_A02_r0_5-QUICO_ATM_OpenFF23_NAGL_shp2-0-6-RND5050_6 |
| Workunit | 31589653 |
| Created | 7 May 2026, 22:45:58 UTC |
| Sent | 7 May 2026, 22:46:00 UTC |
| Report deadline | 12 May 2026, 22:46:00 UTC |
| Received | 8 May 2026, 5:22:48 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 651346 |
| Run time | 29 min 21 sec |
| CPU time | 26 min 6 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 29,331.45 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 847.24 MB |
| Peak swap size | 13.10 GB |
| Peak disk usage | 2.82 GB |
Stderr output
<core_client_version>8.2.9</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
23:53:18 (16472): wrapper (7.9.26016): starting
23:53:18 (16472): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A12_A02_0.pdb
QB_A12_A02_0.xml
QB_A12_A02.inpcrd
QB_A12_A02_input.yaml
QB_A12_A02.pdb
QB_A12_A02.prmtop
QB_A12_A02_sys.xml
run.bat
run.sh
23:53:19 (16472): Library/usr/bin/tar.exe exited; CPU time 0.000000
23:53:19 (16472): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "C:\ProgramData\BOINC\slots\0\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
00:22:05 (16472): C:/Windows/system32/cmd.exe exited; CPU time 1566.343750
00:22:05 (16472): app exit status: 0x16
00:22:05 (16472): called boinc_finish(195)
0 bytes in 0 Free Blocks.
726 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 19777697 bytes.
Dumping objects ->
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{3835554} normal block at 0x0000022D44800D10, 48 bytes long.
Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835543} normal block at 0x0000022D44800CA0, 48 bytes long.
Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61
{3835532} normal block at 0x0000022D448007D0, 48 bytes long.
Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835521} normal block at 0x0000022D44800ED0, 48 bytes long.
Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61
{3835490} normal block at 0x0000022D448F4FB0, 64 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835479} normal block at 0x0000022D449526F0, 235 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
..\api\boinc_api.cpp(309) : {3835476} normal block at 0x0000022D42AECEA0, 8 bytes long.
Data: < ûB- > 00 00 FB 42 2D 02 00 00
{3834699} normal block at 0x0000022D42ADD6C0, 235 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
{3833951} normal block at 0x0000022D42AED990, 8 bytes long.
Data: <PE D- > 50 45 98 44 2D 02 00 00
..\zip\boinc_zip.cpp(122) : {307} normal block at 0x0000022D42AE2050, 260 bytes long.
Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
{292} normal block at 0x0000022D42ADEB50, 80 bytes long.
Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C
{291} normal block at 0x0000022D42AF4370, 16 bytes long.
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{289} normal block at 0x0000022D42AEFEE0, 32 bytes long.
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{288} normal block at 0x0000022D42AF40A0, 16 bytes long.
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{287} normal block at 0x0000022D42AF45F0, 16 bytes long.
Data: < ø®B- > 10 F8 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{286} normal block at 0x0000022D42AF4D20, 16 bytes long.
Data: <è÷®B- > E8 F7 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{285} normal block at 0x0000022D42AF4050, 16 bytes long.
Data: <À÷®B- > C0 F7 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{284} normal block at 0x0000022D42ADCFA0, 48 bytes long.
Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F
{283} normal block at 0x0000022D42AF3FB0, 16 bytes long.
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{282} normal block at 0x0000022D42AF00C0, 32 bytes long.
Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69
{281} normal block at 0x0000022D42AF4F00, 16 bytes long.
Data: <0 ®B- > 30 09 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{279} normal block at 0x0000022D42AF4CD0, 16 bytes long.
Data: < ®B- > 08 09 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{278} normal block at 0x0000022D42AF48C0, 16 bytes long.
Data: <à ®B- > E0 08 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{277} normal block at 0x0000022D42AF4AA0, 16 bytes long.
Data: <¸ ®B- > B8 08 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{276} normal block at 0x0000022D42AF4780, 16 bytes long.
Data: < ®B- > 90 08 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{275} normal block at 0x0000022D42AF4140, 16 bytes long.
Data: <h ®B- > 68 08 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{274} normal block at 0x0000022D42AF0720, 32 bytes long.
Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55
{273} normal block at 0x0000022D42AF4870, 16 bytes long.
Data: <@ ®B- > 40 08 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{272} normal block at 0x0000022D42AE0840, 320 bytes long.
Data: <pH¯B- ¯B- > 70 48 AF 42 2D 02 00 00 20 07 AF 42 2D 02 00 00
{271} normal block at 0x0000022D42AF4C30, 16 bytes long.
Data: < ÷®B- > A0 F7 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{270} normal block at 0x0000022D42AF4EB0, 16 bytes long.
Data: <x÷®B- > 78 F7 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{269} normal block at 0x0000022D42AF0DE0, 32 bytes long.
Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65
{268} normal block at 0x0000022D42AF4E60, 16 bytes long.
Data: <P÷®B- > 50 F7 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{267} normal block at 0x0000022D42AF0240, 32 bytes long.
Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62
{266} normal block at 0x0000022D42AF4320, 16 bytes long.
Data: < ö®B- > 98 F6 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{265} normal block at 0x0000022D42AF4E10, 16 bytes long.
Data: <pö®B- > 70 F6 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{264} normal block at 0x0000022D42AF4A00, 16 bytes long.
Data: <Hö®B- > 48 F6 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{263} normal block at 0x0000022D42AF4BE0, 16 bytes long.
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{262} normal block at 0x0000022D42AF4DC0, 16 bytes long.
Data: <øõ®B- > F8 F5 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{261} normal block at 0x0000022D42AF4B40, 16 bytes long.
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{259} normal block at 0x0000022D42AF4D70, 16 bytes long.
Data: < ЭB- > 10 D0 AD 42 2D 02 00 00 00 00 00 00 00 00 00 00
{258} normal block at 0x0000022D42ADD010, 40 bytes long.
Data: <pM¯B- °O D- > 70 4D AF 42 2D 02 00 00 B0 4F 8F 44 2D 02 00 00
{257} normal block at 0x0000022D42AF4820, 16 bytes long.
Data: <°õ®B- > B0 F5 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{256} normal block at 0x0000022D42AF42D0, 16 bytes long.
Data: < õ®B- > 88 F5 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{255} normal block at 0x0000022D42AF08A0, 32 bytes long.
Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
{254} normal block at 0x0000022D42AF4B90, 16 bytes long.
Data: <`õ®B- > 60 F5 AE 42 2D 02 00 00 00 00 00 00 00 00 00 00
{253} normal block at 0x0000022D42AEF560, 992 bytes long.
Data: < K¯B-   ¯B- > 90 4B AF 42 2D 02 00 00 A0 08 AF 42 2D 02 00 00
{89} normal block at 0x0000022D42AF0CC0, 32 bytes long.
Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
{88} normal block at 0x0000022D42AED8F0, 16 bytes long.
Data: <@íB- > 40 C3 AD 42 2D 02 00 00 00 00 00 00 00 00 00 00
{87} normal block at 0x0000022D42ADC340, 40 bytes long.
Data: <ðØ®B- À ¯B- > F0 D8 AE 42 2D 02 00 00 C0 0C AF 42 2D 02 00 00
{66} normal block at 0x0000022D42AECC20, 16 bytes long.
Data: < ê Ò÷ > 80 EA A0 D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{65} normal block at 0x0000022D42AECD60, 16 bytes long.
Data: <@é Ò÷ > 40 E9 A0 D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{64} normal block at 0x0000022D42AED300, 16 bytes long.
Data: <øW Ò÷ > F8 57 9D D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{63} normal block at 0x0000022D42AECA90, 16 bytes long.
Data: <ØW Ò÷ > D8 57 9D D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{62} normal block at 0x0000022D42AED8A0, 16 bytes long.
Data: <P Ò÷ > 50 04 9D D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{61} normal block at 0x0000022D42AED940, 16 bytes long.
Data: <0 Ò÷ > 30 04 9D D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{60} normal block at 0x0000022D42AED030, 16 bytes long.
Data: <à Ò÷ > E0 02 9D D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{59} normal block at 0x0000022D42AED2B0, 16 bytes long.
Data: < Ò÷ > 10 04 9D D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{58} normal block at 0x0000022D42AECF90, 16 bytes long.
Data: <p Ò÷ > 70 04 9D D2 F7 7F 00 00 00 00 00 00 00 00 00 00
{57} normal block at 0x0000022D42AECBD0, 16 bytes long.
Data: < À›Ò÷ > 18 C0 9B D2 F7 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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