Task 38643907
| Name | shp2_A26_A23_r0_1-QUICO_ATM_OpenFF23_NAGL_shp2-0-6-RND8556_4 |
| Workunit | 31589770 |
| Created | 7 May 2026, 22:37:13 UTC |
| Sent | 7 May 2026, 22:37:17 UTC |
| Report deadline | 12 May 2026, 22:37:17 UTC |
| Received | 8 May 2026, 15:26:14 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 594998 |
| Run time | 1 hours 27 min 9 sec |
| CPU time | 1 hours 27 min 9 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 29,038.65 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 952.00 MB |
| Peak swap size | 13.38 GB |
| Peak disk usage | 3.10 GB |
Stderr output
<core_client_version>8.2.4</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
09:00:45 (180956): wrapper (7.9.26016): starting
09:00:45 (180956): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A26_A23_0.pdb
QB_A26_A23_0.xml
QB_A26_A23.inpcrd
QB_A26_A23_input.yaml
QB_A26_A23.pdb
QB_A26_A23.prmtop
QB_A26_A23_sys.xml
run.bat
run.sh
09:00:46 (180956): Library/usr/bin/tar.exe exited; CPU time 0.015625
09:00:46 (180956): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'M:\00_boinc\31416\slots\0\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'M:\00_boinc\31416\slots\0\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "M:\00_boinc\31416\slots\0\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "M:\00_boinc\31416\slots\0\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "M:\00_boinc\31416\slots\0\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "M:\00_boinc\31416\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "M:\00_boinc\31416\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "M:\00_boinc\31416\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "M:\00_boinc\31416\slots\0\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "M:\00_boinc\31416\slots\0\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "M:\00_boinc\31416\slots\0\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
10:24:11 (180956): C:/Windows/system32/cmd.exe exited; CPU time 5229.468750
10:24:11 (180956): app exit status: 0x16
10:24:11 (180956): called boinc_finish(195)
0 bytes in 0 Free Blocks.
552 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 142570219 bytes.
Dumping objects ->
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{3835623} normal block at 0x00000211FFB5AB40, 32 bytes long.
Data: <HOME=M:\00_boinc> 48 4F 4D 45 3D 4D 3A 5C 30 30 5F 62 6F 69 6E 63
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Data: <TMP=M:\00_boinc\> 54 4D 50 3D 4D 3A 5C 30 30 5F 62 6F 69 6E 63 5C
{3835601} normal block at 0x00000211FFB5A9C0, 32 bytes long.
Data: <TEMP=M:\00_boinc> 54 45 4D 50 3D 4D 3A 5C 30 30 5F 62 6F 69 6E 63
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{3835559} normal block at 0x00000211FF30D0A0, 48 bytes long.
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{3835548} normal block at 0x00000211FFB67580, 180 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
..\api\boinc_api.cpp(309) : {3835545} normal block at 0x00000211FF2DA340, 8 bytes long.
Data: < &ÿ > 00 00 26 FF 11 02 00 00
{3834762} normal block at 0x00000211FFB673A0, 180 bytes long.
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Data: < ¶ÿ > 90 80 B6 FF 11 02 00 00
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{318} normal block at 0x00000211FF2D3300, 80 bytes long.
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{304} normal block at 0x00000211FF2E9950, 16 bytes long.
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{302} normal block at 0x00000211FF2E9A40, 16 bytes long.
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Data: < -ÿ > 88 08 2D FF 11 02 00 00 00 00 00 00 00 00 00 00
{300} normal block at 0x00000211FF2E2AD0, 32 bytes long.
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{284} normal block at 0x00000211FF2E4780, 40 bytes long.
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{280} normal block at 0x00000211FF2E9DB0, 16 bytes long.
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{88} normal block at 0x00000211FF2DAC00, 16 bytes long.
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{85} normal block at 0x00000211FF2DABB0, 16 bytes long.
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{84} normal block at 0x00000211FF2DAFC0, 16 bytes long.
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{83} normal block at 0x00000211FF2DA4D0, 16 bytes long.
Data: < À!»ö > 18 C0 21 BB F6 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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