Task 38643588
| Name | shp2_A22_A13_r0_5-QUICO_ATM_OpenFF23_NAGL_shp2-0-6-RND3723_6 |
| Workunit | 31589749 |
| Created | 7 May 2026, 15:54:16 UTC |
| Sent | 7 May 2026, 15:54:20 UTC |
| Report deadline | 12 May 2026, 15:54:20 UTC |
| Received | 7 May 2026, 19:19:38 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 613630 |
| Run time | 1 hours 3 min 30 sec |
| CPU time | 53 min 43 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 53,036.10 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 766.77 MB |
| Peak swap size | 7.41 GB |
| Peak disk usage | 2.82 GB |
Stderr output
<core_client_version>8.0.2</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
11:14:55 (9580): wrapper (7.9.26016): starting
11:14:55 (9580): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A22_A13_0.pdb
QB_A22_A13_0.xml
QB_A22_A13.inpcrd
QB_A22_A13_input.yaml
QB_A22_A13.pdb
QB_A22_A13.prmtop
QB_A22_A13_sys.xml
run.bat
run.sh
11:14:58 (9580): Library/usr/bin/tar.exe exited; CPU time 0.000000
11:14:58 (9580): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "C:\ProgramData\BOINC\slots\1\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
12:17:30 (9580): C:/Windows/system32/cmd.exe exited; CPU time 3223.500000
12:17:30 (9580): app exit status: 0x16
12:17:30 (9580): called boinc_finish(195)
0 bytes in 0 Free Blocks.
566 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 48621257 bytes.
Dumping objects ->
{3835649} normal block at 0x0000029204652FC0, 48 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835638} normal block at 0x0000029202963220, 48 bytes long.
Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835627} normal block at 0x0000029202962EA0, 48 bytes long.
Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61
{3835616} normal block at 0x0000029202962E30, 48 bytes long.
Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835605} normal block at 0x00000292029631B0, 48 bytes long.
Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61
{3835574} normal block at 0x00000292045ABE00, 64 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835563} normal block at 0x0000029204520B90, 155 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
..\api\boinc_api.cpp(309) : {3835560} normal block at 0x000002920295B370, 8 bytes long.
Data: < í ’ > 00 00 ED 02 92 02 00 00
{3834734} normal block at 0x00000292045202D0, 155 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
{3833963} normal block at 0x000002920295B410, 8 bytes long.
Data: < êG ’ > 00 EA 47 04 92 02 00 00
..\zip\boinc_zip.cpp(122) : {313} normal block at 0x000002920295EF00, 260 bytes long.
Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
{298} normal block at 0x00000292029557C0, 80 bytes long.
Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C
{297} normal block at 0x0000029202964280, 16 bytes long.
Data: <HL– ’ > 48 4C 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{296} normal block at 0x0000029202963EC0, 16 bytes long.
Data: < L– ’ > 20 4C 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{295} normal block at 0x000002920295D070, 32 bytes long.
Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D
{294} normal block at 0x0000029202964320, 16 bytes long.
Data: <øK– ’ > F8 4B 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{293} normal block at 0x0000029202963E70, 16 bytes long.
Data: <ÐK– ’ > D0 4B 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{292} normal block at 0x0000029202963560, 16 bytes long.
Data: <¨K– ’ > A8 4B 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{291} normal block at 0x0000029202963DD0, 16 bytes long.
Data: < K– ’ > 80 4B 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{290} normal block at 0x0000029202962C70, 48 bytes long.
Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F
{289} normal block at 0x0000029202963D80, 16 bytes long.
Data: < ô” ’ > 98 F4 94 02 92 02 00 00 00 00 00 00 00 00 00 00
{288} normal block at 0x000002920295D010, 32 bytes long.
Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69
{287} normal block at 0x00000292029641E0, 16 bytes long.
Data: <pô” ’ > 70 F4 94 02 92 02 00 00 00 00 00 00 00 00 00 00
{285} normal block at 0x0000029202963D30, 16 bytes long.
Data: <Hô” ’ > 48 F4 94 02 92 02 00 00 00 00 00 00 00 00 00 00
{284} normal block at 0x0000029202963FB0, 16 bytes long.
Data: < ô” ’ > 20 F4 94 02 92 02 00 00 00 00 00 00 00 00 00 00
{283} normal block at 0x0000029202963CE0, 16 bytes long.
Data: <øó” ’ > F8 F3 94 02 92 02 00 00 00 00 00 00 00 00 00 00
{282} normal block at 0x00000292029639C0, 16 bytes long.
Data: <Ðó” ’ > D0 F3 94 02 92 02 00 00 00 00 00 00 00 00 00 00
{281} normal block at 0x0000029202963BF0, 16 bytes long.
Data: <¨ó” ’ > A8 F3 94 02 92 02 00 00 00 00 00 00 00 00 00 00
{280} normal block at 0x000002920295CB30, 32 bytes long.
Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55
{279} normal block at 0x0000029202963AB0, 16 bytes long.
Data: < ó” ’ > 80 F3 94 02 92 02 00 00 00 00 00 00 00 00 00 00
{278} normal block at 0x000002920294F380, 320 bytes long.
Data: <°:– ’ 0Ë• ’ > B0 3A 96 02 92 02 00 00 30 CB 95 02 92 02 00 00
{277} normal block at 0x0000029202963970, 16 bytes long.
Data: <`K– ’ > 60 4B 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{276} normal block at 0x0000029202964460, 16 bytes long.
Data: <8K– ’ > 38 4B 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{275} normal block at 0x000002920295CA70, 32 bytes long.
Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65
{274} normal block at 0x0000029202963880, 16 bytes long.
Data: < K– ’ > 10 4B 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{273} normal block at 0x000002920295D1F0, 32 bytes long.
Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62
{272} normal block at 0x0000029202963B00, 16 bytes long.
Data: <XJ– ’ > 58 4A 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{271} normal block at 0x0000029202963A60, 16 bytes long.
Data: <0J– ’ > 30 4A 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{270} normal block at 0x0000029202964050, 16 bytes long.
Data: < J– ’ > 08 4A 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{269} normal block at 0x0000029202963830, 16 bytes long.
Data: <àI– ’ > E0 49 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{268} normal block at 0x00000292029637E0, 16 bytes long.
Data: <¸I– ’ > B8 49 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{267} normal block at 0x00000292029640F0, 16 bytes long.
Data: < I– ’ > 90 49 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{265} normal block at 0x0000029202963740, 16 bytes long.
Data: < /– ’ > 80 2F 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{264} normal block at 0x0000029202962F80, 40 bytes long.
Data: <@7– ’ ¾Z ’ > 40 37 96 02 92 02 00 00 00 BE 5A 04 92 02 00 00
{263} normal block at 0x0000029202963920, 16 bytes long.
Data: <pI– ’ > 70 49 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{262} normal block at 0x00000292029644B0, 16 bytes long.
Data: <HI– ’ > 48 49 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{261} normal block at 0x000002920295CDD0, 32 bytes long.
Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
{260} normal block at 0x0000029202963B50, 16 bytes long.
Data: < I– ’ > 20 49 96 02 92 02 00 00 00 00 00 00 00 00 00 00
{259} normal block at 0x0000029202964920, 992 bytes long.
Data: <P;– ’ ÐÍ• ’ > 50 3B 96 02 92 02 00 00 D0 CD 95 02 92 02 00 00
{95} normal block at 0x000002920295C830, 32 bytes long.
Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
{94} normal block at 0x000002920295A6F0, 16 bytes long.
Data: <0ç” ’ > 30 E7 94 02 92 02 00 00 00 00 00 00 00 00 00 00
{93} normal block at 0x000002920294E730, 40 bytes long.
Data: <𦕠’ 0È• ’ > F0 A6 95 02 92 02 00 00 30 C8 95 02 92 02 00 00
{72} normal block at 0x000002920295B140, 16 bytes long.
Data: < ê);÷ > 80 EA 29 3B F7 7F 00 00 00 00 00 00 00 00 00 00
{71} normal block at 0x000002920295ACE0, 16 bytes long.
Data: <@é);÷ > 40 E9 29 3B F7 7F 00 00 00 00 00 00 00 00 00 00
{70} normal block at 0x000002920295AC90, 16 bytes long.
Data: <øW&;÷ > F8 57 26 3B F7 7F 00 00 00 00 00 00 00 00 00 00
{69} normal block at 0x000002920295B500, 16 bytes long.
Data: <ØW&;÷ > D8 57 26 3B F7 7F 00 00 00 00 00 00 00 00 00 00
{68} normal block at 0x000002920295B2D0, 16 bytes long.
Data: <P &;÷ > 50 04 26 3B F7 7F 00 00 00 00 00 00 00 00 00 00
{67} normal block at 0x000002920295ADD0, 16 bytes long.
Data: <0 &;÷ > 30 04 26 3B F7 7F 00 00 00 00 00 00 00 00 00 00
{66} normal block at 0x000002920295AC40, 16 bytes long.
Data: <à &;÷ > E0 02 26 3B F7 7F 00 00 00 00 00 00 00 00 00 00
{65} normal block at 0x000002920295A740, 16 bytes long.
Data: < &;÷ > 10 04 26 3B F7 7F 00 00 00 00 00 00 00 00 00 00
{64} normal block at 0x000002920295AD80, 16 bytes long.
Data: <p &;÷ > 70 04 26 3B F7 7F 00 00 00 00 00 00 00 00 00 00
{63} normal block at 0x000002920295A790, 16 bytes long.
Data: < À$;÷ > 18 C0 24 3B F7 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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