Task 38643415
| Name | shp2_A07_A24_r0_3-QUICO_ATM_OpenFF23_NAGL_shp2-0-6-RND4898_2 |
| Workunit | 31589621 |
| Created | 7 May 2026, 13:39:14 UTC |
| Sent | 7 May 2026, 13:39:17 UTC |
| Report deadline | 12 May 2026, 13:39:17 UTC |
| Received | 7 May 2026, 13:43:51 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 604231 |
| Run time | 1 min 35 sec |
| CPU time | 47 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 82,585.56 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 755.79 MB |
| Peak swap size | 13.31 GB |
| Peak disk usage | 1.42 GB |
Stderr output
<core_client_version>8.2.8</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
08:41:46 (27276): wrapper (7.9.26016): starting
08:41:46 (27276): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A07_A24_0.pdb
QB_A07_A24_0.xml
QB_A07_A24.inpcrd
QB_A07_A24_input.yaml
QB_A07_A24.pdb
QB_A07_A24.prmtop
QB_A07_A24_sys.xml
run.bat
run.sh
08:41:47 (27276): Library/usr/bin/tar.exe exited; CPU time 0.000000
08:41:47 (27276): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'M:\BOINC\slots\1\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'M:\BOINC\slots\1\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "M:\BOINC\slots\1\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "M:\BOINC\slots\1\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "M:\BOINC\slots\1\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "M:\BOINC\slots\1\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "M:\BOINC\slots\1\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "M:\BOINC\slots\1\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "M:\BOINC\slots\1\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "M:\BOINC\slots\1\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "M:\BOINC\slots\1\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
08:42:54 (27276): C:/Windows/system32/cmd.exe exited; CPU time 47.281250
08:42:54 (27276): app exit status: 0x16
08:42:54 (27276): called boinc_finish(195)
0 bytes in 0 Free Blocks.
456 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 1291179 bytes.
Dumping objects ->
{3835618} normal block at 0x000001D66D8E4E80, 48 bytes long.
Data: <PATH=M:\BOINC\sl> 50 41 54 48 3D 4D 3A 5C 42 4F 49 4E 43 5C 73 6C
{3835607} normal block at 0x000001D66F6F74F0, 32 bytes long.
Data: <HOME=M:\BOINC\sl> 48 4F 4D 45 3D 4D 3A 5C 42 4F 49 4E 43 5C 73 6C
{3835596} normal block at 0x000001D66F6F7190, 32 bytes long.
Data: <TMP=M:\BOINC\slo> 54 4D 50 3D 4D 3A 5C 42 4F 49 4E 43 5C 73 6C 6F
{3835585} normal block at 0x000001D66F6F73D0, 32 bytes long.
Data: <TEMP=M:\BOINC\sl> 54 45 4D 50 3D 4D 3A 5C 42 4F 49 4E 43 5C 73 6C
{3835574} normal block at 0x000001D66F6F6E30, 32 bytes long.
Data: <TMPDIR=M:\BOINC\> 54 4D 50 44 49 52 3D 4D 3A 5C 42 4F 49 4E 43 5C
{3835543} normal block at 0x000001D66D8E4CC0, 48 bytes long.
Data: <PATH=M:\BOINC\sl> 50 41 54 48 3D 4D 3A 5C 42 4F 49 4E 43 5C 73 6C
{3835532} normal block at 0x000001D66D94A400, 140 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
..\api\boinc_api.cpp(309) : {3835529} normal block at 0x000001D66D8DDBB0, 8 bytes long.
Data: < ómÖ > 00 00 F3 6D D6 01 00 00
{3834729} normal block at 0x000001D66D949D80, 140 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
{3833965} normal block at 0x000001D66D8DDE30, 8 bytes long.
Data: <ðØŒmÖ > F0 D8 8C 6D D6 01 00 00
..\zip\boinc_zip.cpp(122) : {314} normal block at 0x000001D66D8D0BC0, 260 bytes long.
Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
{299} normal block at 0x000001D66D8D2660, 80 bytes long.
Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C
{298} normal block at 0x000001D66D8E5AE0, 16 bytes long.
Data: <HkŽmÖ > 48 6B 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{297} normal block at 0x000001D66D8E6580, 16 bytes long.
Data: < kŽmÖ > 20 6B 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{296} normal block at 0x000001D66D8E02B0, 32 bytes long.
Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D
{295} normal block at 0x000001D66D8E5E50, 16 bytes long.
Data: <øjŽmÖ > F8 6A 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{294} normal block at 0x000001D66D8E59F0, 16 bytes long.
Data: <ÐjŽmÖ > D0 6A 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{293} normal block at 0x000001D66D8E5F40, 16 bytes long.
Data: <¨jŽmÖ > A8 6A 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{292} normal block at 0x000001D66D8E63F0, 16 bytes long.
Data: < jŽmÖ > 80 6A 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{291} normal block at 0x000001D66D8E5270, 48 bytes long.
Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F
{290} normal block at 0x000001D66D8E66C0, 16 bytes long.
Data: < mÖ > 18 00 8D 6D D6 01 00 00 00 00 00 00 00 00 00 00
{289} normal block at 0x000001D66D8E0070, 32 bytes long.
Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69
{288} normal block at 0x000001D66D8E64E0, 16 bytes long.
Data: <ðÿŒmÖ > F0 FF 8C 6D D6 01 00 00 00 00 00 00 00 00 00 00
{286} normal block at 0x000001D66D8E6350, 16 bytes long.
Data: <ÈÿŒmÖ > C8 FF 8C 6D D6 01 00 00 00 00 00 00 00 00 00 00
{285} normal block at 0x000001D66D8E5A90, 16 bytes long.
Data: < ÿŒmÖ > A0 FF 8C 6D D6 01 00 00 00 00 00 00 00 00 00 00
{284} normal block at 0x000001D66D8E6300, 16 bytes long.
Data: <xÿŒmÖ > 78 FF 8C 6D D6 01 00 00 00 00 00 00 00 00 00 00
{283} normal block at 0x000001D66D8E62B0, 16 bytes long.
Data: <PÿŒmÖ > 50 FF 8C 6D D6 01 00 00 00 00 00 00 00 00 00 00
{282} normal block at 0x000001D66D8E6710, 16 bytes long.
Data: <(ÿŒmÖ > 28 FF 8C 6D D6 01 00 00 00 00 00 00 00 00 00 00
{281} normal block at 0x000001D66D8DFD70, 32 bytes long.
Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55
{280} normal block at 0x000001D66D8E6080, 16 bytes long.
Data: < ÿŒmÖ > 00 FF 8C 6D D6 01 00 00 00 00 00 00 00 00 00 00
{279} normal block at 0x000001D66D8CFF00, 320 bytes long.
Data: < `ŽmÖ pý mÖ > 80 60 8E 6D D6 01 00 00 70 FD 8D 6D D6 01 00 00
{278} normal block at 0x000001D66D8E6490, 16 bytes long.
Data: <`jŽmÖ > 60 6A 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{277} normal block at 0x000001D66D8E6530, 16 bytes long.
Data: <8jŽmÖ > 38 6A 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{276} normal block at 0x000001D66D8E01F0, 32 bytes long.
Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65
{275} normal block at 0x000001D66D8E6210, 16 bytes long.
Data: < jŽmÖ > 10 6A 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{274} normal block at 0x000001D66D8E00D0, 32 bytes long.
Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62
{273} normal block at 0x000001D66D8E67B0, 16 bytes long.
Data: <XiŽmÖ > 58 69 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{272} normal block at 0x000001D66D8E5C70, 16 bytes long.
Data: <0iŽmÖ > 30 69 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{271} normal block at 0x000001D66D8E5FE0, 16 bytes long.
Data: < iŽmÖ > 08 69 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{270} normal block at 0x000001D66D8E6440, 16 bytes long.
Data: <àhŽmÖ > E0 68 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{269} normal block at 0x000001D66D8E6620, 16 bytes long.
Data: <¸hŽmÖ > B8 68 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{268} normal block at 0x000001D66D8E6760, 16 bytes long.
Data: < hŽmÖ > 90 68 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{266} normal block at 0x000001D66D8E5A40, 16 bytes long.
Data: < MŽmÖ > A0 4D 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{265} normal block at 0x000001D66D8E4DA0, 40 bytes long.
Data: <@ZŽmÖ ÀLŽmÖ > 40 5A 8E 6D D6 01 00 00 C0 4C 8E 6D D6 01 00 00
{264} normal block at 0x000001D66D8E5EA0, 16 bytes long.
Data: <phŽmÖ > 70 68 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{263} normal block at 0x000001D66D8E59A0, 16 bytes long.
Data: <HhŽmÖ > 48 68 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{262} normal block at 0x000001D66D8E0430, 32 bytes long.
Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
{261} normal block at 0x000001D66D8E6030, 16 bytes long.
Data: < hŽmÖ > 20 68 8E 6D D6 01 00 00 00 00 00 00 00 00 00 00
{260} normal block at 0x000001D66D8E6820, 992 bytes long.
Data: <0`ŽmÖ 0 ŽmÖ > 30 60 8E 6D D6 01 00 00 30 04 8E 6D D6 01 00 00
{96} normal block at 0x000001D66D8DFE90, 32 bytes long.
Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
{95} normal block at 0x000001D66D8DD930, 16 bytes long.
Data: < åŒmÖ > 20 E5 8C 6D D6 01 00 00 00 00 00 00 00 00 00 00
{94} normal block at 0x000001D66D8CE520, 40 bytes long.
Data: <0Ù mÖ þ mÖ > 30 D9 8D 6D D6 01 00 00 90 FE 8D 6D D6 01 00 00
{73} normal block at 0x000001D66D8DDDE0, 16 bytes long.
Data: < ê2`ö > 80 EA 32 60 F6 7F 00 00 00 00 00 00 00 00 00 00
{72} normal block at 0x000001D66D8DE060, 16 bytes long.
Data: <@é2`ö > 40 E9 32 60 F6 7F 00 00 00 00 00 00 00 00 00 00
{71} normal block at 0x000001D66D8DD9D0, 16 bytes long.
Data: <øW/`ö > F8 57 2F 60 F6 7F 00 00 00 00 00 00 00 00 00 00
{70} normal block at 0x000001D66D8DD750, 16 bytes long.
Data: <ØW/`ö > D8 57 2F 60 F6 7F 00 00 00 00 00 00 00 00 00 00
{69} normal block at 0x000001D66D8DD2F0, 16 bytes long.
Data: <P /`ö > 50 04 2F 60 F6 7F 00 00 00 00 00 00 00 00 00 00
{68} normal block at 0x000001D66D8DE100, 16 bytes long.
Data: <0 /`ö > 30 04 2F 60 F6 7F 00 00 00 00 00 00 00 00 00 00
{67} normal block at 0x000001D66D8DD700, 16 bytes long.
Data: <à /`ö > E0 02 2F 60 F6 7F 00 00 00 00 00 00 00 00 00 00
{66} normal block at 0x000001D66D8DD8E0, 16 bytes long.
Data: < /`ö > 10 04 2F 60 F6 7F 00 00 00 00 00 00 00 00 00 00
{65} normal block at 0x000001D66D8DD4D0, 16 bytes long.
Data: <p /`ö > 70 04 2F 60 F6 7F 00 00 00 00 00 00 00 00 00 00
{64} normal block at 0x000001D66D8DDD90, 16 bytes long.
Data: < À-`ö > 18 C0 2D 60 F6 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
©2026 Universitat Pompeu Fabra