Task 38643362
| Name | shp2_A20_A15_r0_2-QUICO_ATM_OpenFF23_NAGL_shp2-0-6-RND0318_1 |
| Workunit | 31589710 |
| Created | 7 May 2026, 12:55:42 UTC |
| Sent | 7 May 2026, 12:55:46 UTC |
| Report deadline | 12 May 2026, 12:55:46 UTC |
| Received | 7 May 2026, 16:38:14 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 593616 |
| Run time | 3 hours 28 min 21 sec |
| CPU time | 3 hours 28 min 21 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 29,505.83 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 1.02 GB |
| Peak swap size | 7.43 GB |
| Peak disk usage | 3.11 GB |
Stderr output
<core_client_version>8.2.4</core_client_version>
<![CDATA[
<message>
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(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
22:02:06 (138792): wrapper (7.9.26016): starting
22:02:06 (138792): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A20_A15_0.pdb
QB_A20_A15_0.xml
QB_A20_A15.inpcrd
QB_A20_A15_input.yaml
QB_A20_A15.pdb
QB_A20_A15.prmtop
QB_A20_A15_sys.xml
run.bat
run.sh
22:02:09 (138792): Library/usr/bin/tar.exe exited; CPU time 0.031250
22:02:09 (138792): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
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WARNING: The script pyaml.exe is installed in 'D:\ProgramData\BOINC\slots\15\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'D:\ProgramData\BOINC\slots\15\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "D:\ProgramData\BOINC\slots\15\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "D:\ProgramData\BOINC\slots\15\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "D:\ProgramData\BOINC\slots\15\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "D:\ProgramData\BOINC\slots\15\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "D:\ProgramData\BOINC\slots\15\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "D:\ProgramData\BOINC\slots\15\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "D:\ProgramData\BOINC\slots\15\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "D:\ProgramData\BOINC\slots\15\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "D:\ProgramData\BOINC\slots\15\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
01:36:13 (138792): C:/Windows/system32/cmd.exe exited; CPU time 12501.796875
01:36:13 (138792): app exit status: 0x16
01:36:13 (138792): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 217232095 bytes.
Dumping objects ->
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Data: <PATH=D:\ProgramD> 50 41 54 48 3D 44 3A 5C 50 72 6F 67 72 61 6D 44
{3835314} normal block at 0x0000017EE36F0ED0, 48 bytes long.
Data: <HOME=D:\ProgramD> 48 4F 4D 45 3D 44 3A 5C 50 72 6F 67 72 61 6D 44
{3835303} normal block at 0x0000017EE36F0AE0, 48 bytes long.
Data: <TMP=D:\ProgramDa> 54 4D 50 3D 44 3A 5C 50 72 6F 67 72 61 6D 44 61
{3835292} normal block at 0x0000017EE36F0E60, 48 bytes long.
Data: <TEMP=D:\ProgramD> 54 45 4D 50 3D 44 3A 5C 50 72 6F 67 72 61 6D 44
{3835281} normal block at 0x0000017EE36F15D0, 48 bytes long.
Data: <TMPDIR=D:\Progra> 54 4D 50 44 49 52 3D 44 3A 5C 50 72 6F 67 72 61
{3835250} normal block at 0x0000017EE3B596A0, 64 bytes long.
Data: <PATH=D:\ProgramD> 50 41 54 48 3D 44 3A 5C 50 72 6F 67 72 61 6D 44
..\api\boinc_api.cpp(309) : {3835237} normal block at 0x0000017EE1B7E3C0, 8 bytes long.
Data: < ~ > 00 00 F8 E1 7E 01 00 00
{3834073} normal block at 0x0000017EE1B7DD80, 8 bytes long.
Data: < ݶ ~ > 90 DD B6 E1 7E 01 00 00
..\zip\boinc_zip.cpp(122) : {316} normal block at 0x0000017EE1B71BE0, 260 bytes long.
Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
{301} normal block at 0x0000017EE1B72000, 80 bytes long.
Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C
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{298} normal block at 0x0000017EE1B80B60, 32 bytes long.
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Data: <hu¸ ~ > 68 75 B8 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{296} normal block at 0x0000017EE1B86E10, 16 bytes long.
Data: <@u¸ ~ > 40 75 B8 E1 7E 01 00 00 00 00 00 00 00 00 00 00
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Data: < u¸ ~ > 18 75 B8 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{294} normal block at 0x0000017EE1B86820, 16 bytes long.
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{293} normal block at 0x0000017EE1B82300, 48 bytes long.
Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F
{292} normal block at 0x0000017EE1B86370, 16 bytes long.
Data: <( · ~ > 28 0E B7 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{291} normal block at 0x0000017EE1B80800, 32 bytes long.
Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69
{290} normal block at 0x0000017EE1B86460, 16 bytes long.
Data: < · ~ > 00 0E B7 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{288} normal block at 0x0000017EE1B86E60, 16 bytes long.
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{287} normal block at 0x0000017EE1B867D0, 16 bytes long.
Data: <° · ~ > B0 0D B7 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{286} normal block at 0x0000017EE1B86410, 16 bytes long.
Data: < · ~ > 88 0D B7 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{285} normal block at 0x0000017EE1B86910, 16 bytes long.
Data: <` · ~ > 60 0D B7 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{284} normal block at 0x0000017EE1B87180, 16 bytes long.
Data: <8 · ~ > 38 0D B7 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{283} normal block at 0x0000017EE1B804A0, 32 bytes long.
Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55
{282} normal block at 0x0000017EE1B868C0, 16 bytes long.
Data: < · ~ > 10 0D B7 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{281} normal block at 0x0000017EE1B70D10, 320 bytes long.
Data: <Àh¸ ~ ¸ ~ > C0 68 B8 E1 7E 01 00 00 A0 04 B8 E1 7E 01 00 00
{280} normal block at 0x0000017EE1B86C30, 16 bytes long.
Data: <Ðt¸ ~ > D0 74 B8 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{279} normal block at 0x0000017EE1B866E0, 16 bytes long.
Data: <¨t¸ ~ > A8 74 B8 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{278} normal block at 0x0000017EE1B807A0, 32 bytes long.
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{277} normal block at 0x0000017EE1B86730, 16 bytes long.
Data: < t¸ ~ > 80 74 B8 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{276} normal block at 0x0000017EE1B80920, 32 bytes long.
Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62
{275} normal block at 0x0000017EE1B86A00, 16 bytes long.
Data: <Ès¸ ~ > C8 73 B8 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{274} normal block at 0x0000017EE1B87040, 16 bytes long.
Data: < s¸ ~ > A0 73 B8 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{273} normal block at 0x0000017EE1B86320, 16 bytes long.
Data: <xs¸ ~ > 78 73 B8 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{272} normal block at 0x0000017EE1B86C80, 16 bytes long.
Data: <Ps¸ ~ > 50 73 B8 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{271} normal block at 0x0000017EE1B865F0, 16 bytes long.
Data: <(s¸ ~ > 28 73 B8 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{270} normal block at 0x0000017EE1B864B0, 16 bytes long.
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{268} normal block at 0x0000017EE1B86BE0, 16 bytes long.
Data: < "¸ ~ > 90 22 B8 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{267} normal block at 0x0000017EE1B82290, 40 bytes long.
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{266} normal block at 0x0000017EE1B865A0, 16 bytes long.
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{265} normal block at 0x0000017EE1B86780, 16 bytes long.
Data: <¸r¸ ~ > B8 72 B8 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{264} normal block at 0x0000017EE1B80260, 32 bytes long.
Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
{263} normal block at 0x0000017EE1B86640, 16 bytes long.
Data: < r¸ ~ > 90 72 B8 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{262} normal block at 0x0000017EE1B87290, 992 bytes long.
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{98} normal block at 0x0000017EE1B80F80, 32 bytes long.
Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
{97} normal block at 0x0000017EE1B7E190, 16 bytes long.
Data: <Ð ¸ ~ > D0 20 B8 E1 7E 01 00 00 00 00 00 00 00 00 00 00
{96} normal block at 0x0000017EE1B820D0, 40 bytes long.
Data: < · ~ ¸ ~ > 90 E1 B7 E1 7E 01 00 00 80 0F B8 E1 7E 01 00 00
{73} normal block at 0x0000017EE1B7E500, 16 bytes long.
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{72} normal block at 0x0000017EE1B7DCE0, 16 bytes long.
Data: <@ j > 40 E9 EC 6A F7 7F 00 00 00 00 00 00 00 00 00 00
{71} normal block at 0x0000017EE1B7DDD0, 16 bytes long.
Data: < W j > F8 57 E9 6A F7 7F 00 00 00 00 00 00 00 00 00 00
{70} normal block at 0x0000017EE1B7E4B0, 16 bytes long.
Data: <ØW j > D8 57 E9 6A F7 7F 00 00 00 00 00 00 00 00 00 00
{69} normal block at 0x0000017EE1B7DBA0, 16 bytes long.
Data: <P j > 50 04 E9 6A F7 7F 00 00 00 00 00 00 00 00 00 00
{68} normal block at 0x0000017EE1B7DC90, 16 bytes long.
Data: <0 j > 30 04 E9 6A F7 7F 00 00 00 00 00 00 00 00 00 00
{67} normal block at 0x0000017EE1B7DB50, 16 bytes long.
Data: < j > E0 02 E9 6A F7 7F 00 00 00 00 00 00 00 00 00 00
{66} normal block at 0x0000017EE1B7E6E0, 16 bytes long.
Data: < j > 10 04 E9 6A F7 7F 00 00 00 00 00 00 00 00 00 00
{65} normal block at 0x0000017EE1B7E640, 16 bytes long.
Data: <p j > 70 04 E9 6A F7 7F 00 00 00 00 00 00 00 00 00 00
{64} normal block at 0x0000017EE1B7E320, 16 bytes long.
Data: < À j > 18 C0 E7 6A F7 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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