Task 38643228
| Name | shp2_A09_A08_r0_4-QUICO_ATM_OpenFF23_NAGL_shp2-0-6-RND7471_5 |
| Workunit | 31589637 |
| Created | 7 May 2026, 11:21:37 UTC |
| Sent | 7 May 2026, 11:21:45 UTC |
| Report deadline | 12 May 2026, 11:21:45 UTC |
| Received | 7 May 2026, 11:26:11 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 613730 |
| Run time | 2 min 59 sec |
| CPU time | 2 min 24 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 58,715.42 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 772.31 MB |
| Peak swap size | 10.19 GB |
| Peak disk usage | 2.81 GB |
Stderr output
<core_client_version>8.2.9</core_client_version>
<![CDATA[
<message>
(null) nelze spustit.
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
13:22:29 (13408): wrapper (7.9.26016): starting
13:22:29 (13408): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A09_A08_0.pdb
QB_A09_A08_0.xml
QB_A09_A08.inpcrd
QB_A09_A08_input.yaml
QB_A09_A08.pdb
QB_A09_A08.prmtop
QB_A09_A08_sys.xml
run.bat
run.sh
13:22:30 (13408): Library/usr/bin/tar.exe exited; CPU time 0.000000
13:22:30 (13408): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "C:\ProgramData\BOINC\slots\0\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
13:24:52 (13408): C:/Windows/system32/cmd.exe exited; CPU time 144.593750
13:24:52 (13408): app exit status: 0x16
13:24:52 (13408): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 2904215 bytes.
Dumping objects ->
{3835723} normal block at 0x000001FACE12DEA0, 48 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835712} normal block at 0x000001FACE12D7A0, 48 bytes long.
Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835701} normal block at 0x000001FACE12DD50, 48 bytes long.
Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61
{3835690} normal block at 0x000001FACE12D650, 48 bytes long.
Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835679} normal block at 0x000001FACE12D490, 48 bytes long.
Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61
{3835648} normal block at 0x000001FACFE2F1E0, 64 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
..\api\boinc_api.cpp(309) : {3835635} normal block at 0x000001FACE0FEFF0, 8 bytes long.
Data: < gÎú > 00 00 67 CE FA 01 00 00
{3833979} normal block at 0x000001FACE0FEFA0, 8 bytes long.
Data: <Àè Îú > C0 E8 1D CE FA 01 00 00
..\zip\boinc_zip.cpp(122) : {321} normal block at 0x000001FACE0F4800, 260 bytes long.
Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
{306} normal block at 0x000001FACE0F6C70, 80 bytes long.
Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C
{305} normal block at 0x000001FACE10ABE0, 16 bytes long.
Data: < ± Îú > 08 B1 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{304} normal block at 0x000001FACE109E20, 16 bytes long.
Data: <à° Îú > E0 B0 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{303} normal block at 0x000001FACE104920, 32 bytes long.
Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D
{302} normal block at 0x000001FACE10AB90, 16 bytes long.
Data: <¸° Îú > B8 B0 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{301} normal block at 0x000001FACE10AB40, 16 bytes long.
Data: < ° Îú > 90 B0 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{300} normal block at 0x000001FACE10AAA0, 16 bytes long.
Data: <h° Îú > 68 B0 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{299} normal block at 0x000001FACE10AA00, 16 bytes long.
Data: <@° Îú > 40 B0 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{298} normal block at 0x000001FACE1061E0, 48 bytes long.
Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F
{297} normal block at 0x000001FACE10A9B0, 16 bytes long.
Data: < B Îú > 08 42 0F CE FA 01 00 00 00 00 00 00 00 00 00 00
{296} normal block at 0x000001FACE104C20, 32 bytes long.
Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69
{295} normal block at 0x000001FACE10A6E0, 16 bytes long.
Data: <àA Îú > E0 41 0F CE FA 01 00 00 00 00 00 00 00 00 00 00
{293} normal block at 0x000001FACE10A960, 16 bytes long.
Data: <¸A Îú > B8 41 0F CE FA 01 00 00 00 00 00 00 00 00 00 00
{292} normal block at 0x000001FACE10AD70, 16 bytes long.
Data: < A Îú > 90 41 0F CE FA 01 00 00 00 00 00 00 00 00 00 00
{291} normal block at 0x000001FACE10A910, 16 bytes long.
Data: <hA Îú > 68 41 0F CE FA 01 00 00 00 00 00 00 00 00 00 00
{290} normal block at 0x000001FACE10A7D0, 16 bytes long.
Data: <@A Îú > 40 41 0F CE FA 01 00 00 00 00 00 00 00 00 00 00
{289} normal block at 0x000001FACE109F10, 16 bytes long.
Data: < A Îú > 18 41 0F CE FA 01 00 00 00 00 00 00 00 00 00 00
{288} normal block at 0x000001FACE104E00, 32 bytes long.
Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55
{287} normal block at 0x000001FACE10A870, 16 bytes long.
Data: <ð@ Îú > F0 40 0F CE FA 01 00 00 00 00 00 00 00 00 00 00
{286} normal block at 0x000001FACE0F40F0, 320 bytes long.
Data: <p¨ Îú N Îú > 70 A8 10 CE FA 01 00 00 00 4E 10 CE FA 01 00 00
{285} normal block at 0x000001FACE10AA50, 16 bytes long.
Data: < ° Îú > 20 B0 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{284} normal block at 0x000001FACE10AAF0, 16 bytes long.
Data: <ø¯ Îú > F8 AF 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{283} normal block at 0x000001FACE104D40, 32 bytes long.
Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65
{282} normal block at 0x000001FACE10A5A0, 16 bytes long.
Data: <Я Îú > D0 AF 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{281} normal block at 0x000001FACE104500, 32 bytes long.
Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62
{280} normal block at 0x000001FACE10A780, 16 bytes long.
Data: < ¯ Îú > 18 AF 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{279} normal block at 0x000001FACE10A320, 16 bytes long.
Data: <ð® Îú > F0 AE 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{278} normal block at 0x000001FACE10A4B0, 16 bytes long.
Data: <È® Îú > C8 AE 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{277} normal block at 0x000001FACE10A460, 16 bytes long.
Data: < ® Îú > A0 AE 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{276} normal block at 0x000001FACE10A2D0, 16 bytes long.
Data: <x® Îú > 78 AE 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{275} normal block at 0x000001FACE10A230, 16 bytes long.
Data: <P® Îú > 50 AE 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{273} normal block at 0x000001FACE10A8C0, 16 bytes long.
Data: < d Îú > 10 64 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{272} normal block at 0x000001FACE106410, 40 bytes long.
Data: <À¨ Îú àñâÏú > C0 A8 10 CE FA 01 00 00 E0 F1 E2 CF FA 01 00 00
{271} normal block at 0x000001FACE10A730, 16 bytes long.
Data: <0® Îú > 30 AE 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{270} normal block at 0x000001FACE10AD20, 16 bytes long.
Data: < ® Îú > 08 AE 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{269} normal block at 0x000001FACE104CE0, 32 bytes long.
Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
{268} normal block at 0x000001FACE10A000, 16 bytes long.
Data: <à­ Îú > E0 AD 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{267} normal block at 0x000001FACE10ADE0, 992 bytes long.
Data: <   Îú àL Îú > 00 A0 10 CE FA 01 00 00 E0 4C 10 CE FA 01 00 00
{103} normal block at 0x000001FACE104C80, 32 bytes long.
Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
{102} normal block at 0x000001FACE0FEF50, 16 bytes long.
Data: <Àb Îú > C0 62 10 CE FA 01 00 00 00 00 00 00 00 00 00 00
{101} normal block at 0x000001FACE1062C0, 40 bytes long.
Data: <Pï Îú L Îú > 50 EF 0F CE FA 01 00 00 80 4C 10 CE FA 01 00 00
{80} normal block at 0x000001FACE0FEA50, 16 bytes long.
Data: < ê/l÷ > 80 EA 2F 6C F7 7F 00 00 00 00 00 00 00 00 00 00
{79} normal block at 0x000001FACE0FE500, 16 bytes long.
Data: <@é/l÷ > 40 E9 2F 6C F7 7F 00 00 00 00 00 00 00 00 00 00
{78} normal block at 0x000001FACE0FEDC0, 16 bytes long.
Data: <øW,l÷ > F8 57 2C 6C F7 7F 00 00 00 00 00 00 00 00 00 00
{77} normal block at 0x000001FACE0FED70, 16 bytes long.
Data: <ØW,l÷ > D8 57 2C 6C F7 7F 00 00 00 00 00 00 00 00 00 00
{76} normal block at 0x000001FACE0FED20, 16 bytes long.
Data: <P ,l÷ > 50 04 2C 6C F7 7F 00 00 00 00 00 00 00 00 00 00
{75} normal block at 0x000001FACE0FEB40, 16 bytes long.
Data: <0 ,l÷ > 30 04 2C 6C F7 7F 00 00 00 00 00 00 00 00 00 00
{74} normal block at 0x000001FACE0FE690, 16 bytes long.
Data: <à ,l÷ > E0 02 2C 6C F7 7F 00 00 00 00 00 00 00 00 00 00
{73} normal block at 0x000001FACE0FE230, 16 bytes long.
Data: < ,l÷ > 10 04 2C 6C F7 7F 00 00 00 00 00 00 00 00 00 00
{72} normal block at 0x000001FACE0FF090, 16 bytes long.
Data: <p ,l÷ > 70 04 2C 6C F7 7F 00 00 00 00 00 00 00 00 00 00
{71} normal block at 0x000001FACE0FE4B0, 16 bytes long.
Data: < À*l÷ > 18 C0 2A 6C F7 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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