Task 38643153
| Name | shp2_A26_A19_r0_1-QUICO_ATM_OpenFF23_NAGL_shp2-0-6-RND6734_0 |
| Workunit | 31589765 |
| Created | 7 May 2026, 10:49:31 UTC |
| Sent | 7 May 2026, 10:49:39 UTC |
| Report deadline | 12 May 2026, 10:49:39 UTC |
| Received | 8 May 2026, 6:44:06 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 628418 |
| Run time | 1 hours 27 min 30 sec |
| CPU time | 1 hours 27 min 30 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 9,336.66 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 730.48 MB |
| Peak swap size | 9.99 GB |
| Peak disk usage | 2.82 GB |
Stderr output
<core_client_version>8.2.8</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
06:17:52 (17372): wrapper (7.9.26016): starting
06:17:52 (17372): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A26_A19_0.pdb
QB_A26_A19_0.xml
QB_A26_A19.inpcrd
QB_A26_A19_input.yaml
QB_A26_A19.pdb
QB_A26_A19.prmtop
QB_A26_A19_sys.xml
run.bat
run.sh
06:17:54 (17372): Library/usr/bin/tar.exe exited; CPU time 0.000000
06:17:54 (17372): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'D:\BOINC_DATA\slots\0\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'D:\BOINC_DATA\slots\0\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "D:\BOINC_DATA\slots\0\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "D:\BOINC_DATA\slots\0\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "D:\BOINC_DATA\slots\0\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "D:\BOINC_DATA\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "D:\BOINC_DATA\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "D:\BOINC_DATA\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "D:\BOINC_DATA\slots\0\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "D:\BOINC_DATA\slots\0\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "D:\BOINC_DATA\slots\0\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
07:42:02 (17372): C:/Windows/system32/cmd.exe exited; CPU time 5250.750000
07:42:02 (17372): app exit status: 0x16
07:42:02 (17372): called boinc_finish(195)
0 bytes in 0 Free Blocks.
536 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 78704983 bytes.
Dumping objects ->
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{3835236} normal block at 0x00000192C0623DD0, 32 bytes long.
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Data: <TEMP=D:\BOINC_DA> 54 45 4D 50 3D 44 3A 5C 42 4F 49 4E 43 5F 44 41
{3835203} normal block at 0x00000192C0624BB0, 32 bytes long.
Data: <TMPDIR=D:\BOINC_> 54 4D 50 44 49 52 3D 44 3A 5C 42 4F 49 4E 43 5F
{3835172} normal block at 0x00000192C04E0D10, 48 bytes long.
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{3835161} normal block at 0x00000192C04EE1F0, 180 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
..\api\boinc_api.cpp(309) : {3835158} normal block at 0x00000192BE8F8570, 8 bytes long.
Data: < †¾’ > 00 00 86 BE 92 01 00 00
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Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
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Data: < #cÀ’ > 20 23 63 C0 92 01 00 00
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Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
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{292} normal block at 0x00000192BE9047A0, 16 bytes long.
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{291} normal block at 0x00000192BE8FE4C0, 48 bytes long.
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{288} normal block at 0x00000192BE904AC0, 16 bytes long.
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{286} normal block at 0x00000192BE904520, 16 bytes long.
Data: <(ÀŽ¾’ > 28 C0 8E BE 92 01 00 00 00 00 00 00 00 00 00 00
{285} normal block at 0x00000192BE903CB0, 16 bytes long.
Data: < ÀŽ¾’ > 00 C0 8E BE 92 01 00 00 00 00 00 00 00 00 00 00
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Data: <°¿Ž¾’ > B0 BF 8E BE 92 01 00 00 00 00 00 00 00 00 00 00
{282} normal block at 0x00000192BE903C60, 16 bytes long.
Data: < ¿Ž¾’ > 88 BF 8E BE 92 01 00 00 00 00 00 00 00 00 00 00
{281} normal block at 0x00000192BE8FC830, 32 bytes long.
Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55
{280} normal block at 0x00000192BE9042F0, 16 bytes long.
Data: <`¿Ž¾’ > 60 BF 8E BE 92 01 00 00 00 00 00 00 00 00 00 00
{279} normal block at 0x00000192BE8EBF60, 320 bytes long.
Data: <ðB ¾’ 0È ¾’ > F0 42 90 BE 92 01 00 00 30 C8 8F BE 92 01 00 00
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Data: < N ¾’ > 10 4E 90 BE 92 01 00 00 00 00 00 00 00 00 00 00
{277} normal block at 0x00000192BE9044D0, 16 bytes long.
Data: <èM ¾’ > E8 4D 90 BE 92 01 00 00 00 00 00 00 00 00 00 00
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{273} normal block at 0x00000192BE904A70, 16 bytes long.
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Data: <¸L ¾’ > B8 4C 90 BE 92 01 00 00 00 00 00 00 00 00 00 00
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Data: < L ¾’ > 90 4C 90 BE 92 01 00 00 00 00 00 00 00 00 00 00
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{265} normal block at 0x00000192BE8FE8B0, 40 bytes long.
Data: <Ð? ¾’ NÀ’ > D0 3F 90 BE 92 01 00 00 10 0D 4E C0 92 01 00 00
{264} normal block at 0x00000192BE904840, 16 bytes long.
Data: < L ¾’ > 20 4C 90 BE 92 01 00 00 00 00 00 00 00 00 00 00
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Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
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{260} normal block at 0x00000192BE904BD0, 992 bytes long.
Data: <PB ¾’ °Æ ¾’ > 50 42 90 BE 92 01 00 00 B0 C6 8F BE 92 01 00 00
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Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
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{72} normal block at 0x00000192BE8F8110, 16 bytes long.
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{71} normal block at 0x00000192BE8F8070, 16 bytes long.
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{69} normal block at 0x00000192BE8F8390, 16 bytes long.
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{68} normal block at 0x00000192BE8F7D00, 16 bytes long.
Data: <0 k ö > 30 04 6B 1A F6 7F 00 00 00 00 00 00 00 00 00 00
{67} normal block at 0x00000192BE8F7C60, 16 bytes long.
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{66} normal block at 0x00000192BE8F79E0, 16 bytes long.
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{65} normal block at 0x00000192BE8F81B0, 16 bytes long.
Data: <p k ö > 70 04 6B 1A F6 7F 00 00 00 00 00 00 00 00 00 00
{64} normal block at 0x00000192BE8F7C10, 16 bytes long.
Data: < Ài ö > 18 C0 69 1A F6 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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