Task 38643146
| Name | shp2_A25_A16_r0_4-QUICO_ATM_OpenFF23_NAGL_shp2-0-6-RND8192_0 |
| Workunit | 31589758 |
| Created | 7 May 2026, 10:48:41 UTC |
| Sent | 7 May 2026, 10:48:52 UTC |
| Report deadline | 12 May 2026, 10:48:52 UTC |
| Received | 7 May 2026, 13:53:14 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 156955 |
| Run time | 33 min 55 sec |
| CPU time | 30 min 38 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 22,244.47 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 742.76 MB |
| Peak swap size | 8.63 GB |
| Peak disk usage | 3.86 GB |
Stderr output
<core_client_version>7.24.1</core_client_version>
<![CDATA[
<message>
%1 nelze spustit.
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
15:20:31 (33184): wrapper (7.9.26016): starting
15:20:31 (33184): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A25_A16_0.pdb
QB_A25_A16_0.xml
QB_A25_A16.inpcrd
QB_A25_A16_input.yaml
QB_A25_A16.pdb
QB_A25_A16.prmtop
QB_A25_A16_sys.xml
run.bat
run.sh
15:20:33 (33184): Library/usr/bin/tar.exe exited; CPU time 0.000000
15:20:33 (33184): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'D:\Boinc_data\slots\14\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'D:\Boinc_data\slots\14\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "D:\Boinc_data\slots\14\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "D:\Boinc_data\slots\14\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "D:\Boinc_data\slots\14\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "D:\Boinc_data\slots\14\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "D:\Boinc_data\slots\14\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "D:\Boinc_data\slots\14\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "D:\Boinc_data\slots\14\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "D:\Boinc_data\slots\14\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "D:\Boinc_data\slots\14\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
15:51:53 (33184): C:/Windows/system32/cmd.exe exited; CPU time 1838.140625
15:51:53 (33184): app exit status: 0x16
15:51:53 (33184): called boinc_finish(195)
0 bytes in 0 Free Blocks.
380 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 38016967 bytes.
Dumping objects ->
{3835307} normal block at 0x000001C986397600, 48 bytes long.
Data: <PATH=D:\Boinc_da> 50 41 54 48 3D 44 3A 5C 42 6F 69 6E 63 5F 64 61
{3835296} normal block at 0x000001C9880248D0, 32 bytes long.
Data: <HOME=D:\Boinc_da> 48 4F 4D 45 3D 44 3A 5C 42 6F 69 6E 63 5F 64 61
{3835285} normal block at 0x000001C988025530, 32 bytes long.
Data: <TMP=D:\Boinc_dat> 54 4D 50 3D 44 3A 5C 42 6F 69 6E 63 5F 64 61 74
{3835274} normal block at 0x000001C9880244B0, 32 bytes long.
Data: <TEMP=D:\Boinc_da> 54 45 4D 50 3D 44 3A 5C 42 6F 69 6E 63 5F 64 61
{3835263} normal block at 0x000001C988024B10, 32 bytes long.
Data: <TMPDIR=D:\Boinc_> 54 4D 50 44 49 52 3D 44 3A 5C 42 6F 69 6E 63 5F
{3835232} normal block at 0x000001C986397DE0, 48 bytes long.
Data: <PATH=D:\Boinc_da> 50 41 54 48 3D 44 3A 5C 42 6F 69 6E 63 5F 64 61
{3835221} normal block at 0x000001C987FEF010, 102 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
..\api\boinc_api.cpp(309) : {3835218} normal block at 0x000001C986366E60, 8 bytes long.
Data: < Í‡É > 00 00 CD 87 C9 01 00 00
{3834570} normal block at 0x000001C987FEF850, 102 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
{3833957} normal block at 0x000001C986367AE0, 8 bytes long.
Data: <0äî‡É > 30 E4 EE 87 C9 01 00 00
..\zip\boinc_zip.cpp(122) : {310} normal block at 0x000001C986373030, 260 bytes long.
Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
{295} normal block at 0x000001C986373F70, 80 bytes long.
Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C
{294} normal block at 0x000001C986374D40, 16 bytes long.
Data: <XS7†É > 58 53 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{293} normal block at 0x000001C986374C50, 16 bytes long.
Data: <0S7†É > 30 53 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{292} normal block at 0x000001C98636BEA0, 32 bytes long.
Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D
{291} normal block at 0x000001C986374C00, 16 bytes long.
Data: < S7†É > 08 53 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{290} normal block at 0x000001C986374930, 16 bytes long.
Data: <àR7†É > E0 52 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{289} normal block at 0x000001C9863748E0, 16 bytes long.
Data: <¸R7†É > B8 52 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{288} normal block at 0x000001C986374DE0, 16 bytes long.
Data: < R7†É > 90 52 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{287} normal block at 0x000001C98636DCF0, 48 bytes long.
Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F
{286} normal block at 0x000001C986374B10, 16 bytes long.
Data: < ?7†É > 08 3F 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{285} normal block at 0x000001C98636C140, 32 bytes long.
Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69
{284} normal block at 0x000001C986374B60, 16 bytes long.
Data: <à>7†É > E0 3E 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{282} normal block at 0x000001C986374840, 16 bytes long.
Data: <¸>7†É > B8 3E 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{281} normal block at 0x000001C9863747F0, 16 bytes long.
Data: < >7†É > 90 3E 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{280} normal block at 0x000001C986374750, 16 bytes long.
Data: <h>7†É > 68 3E 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{279} normal block at 0x000001C9863742A0, 16 bytes long.
Data: <@>7†É > 40 3E 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{278} normal block at 0x000001C9863746B0, 16 bytes long.
Data: < >7†É > 18 3E 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{277} normal block at 0x000001C98636BC60, 32 bytes long.
Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55
{276} normal block at 0x000001C986374660, 16 bytes long.
Data: <ð=7†É > F0 3D 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{275} normal block at 0x000001C986373DF0, 320 bytes long.
Data: <`F7†É `¼6†É > 60 46 37 86 C9 01 00 00 60 BC 36 86 C9 01 00 00
{274} normal block at 0x000001C986374700, 16 bytes long.
Data: <pR7†É > 70 52 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{273} normal block at 0x000001C986374520, 16 bytes long.
Data: <HR7†É > 48 52 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{272} normal block at 0x000001C98636C920, 32 bytes long.
Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65
{271} normal block at 0x000001C9863743E0, 16 bytes long.
Data: < R7†É > 20 52 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{270} normal block at 0x000001C98636C5C0, 32 bytes long.
Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62
{269} normal block at 0x000001C986374FC0, 16 bytes long.
Data: <hQ7†É > 68 51 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{268} normal block at 0x000001C9863741B0, 16 bytes long.
Data: <@Q7†É > 40 51 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{267} normal block at 0x000001C986374A70, 16 bytes long.
Data: < Q7†É > 18 51 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{266} normal block at 0x000001C986374890, 16 bytes long.
Data: <ðP7†É > F0 50 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{265} normal block at 0x000001C9863744D0, 16 bytes long.
Data: <ÈP7†É > C8 50 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{264} normal block at 0x000001C986374CF0, 16 bytes long.
Data: < P7†É > A0 50 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{262} normal block at 0x000001C986374110, 16 bytes long.
Data: <`Ý6†É > 60 DD 36 86 C9 01 00 00 00 00 00 00 00 00 00 00
{261} normal block at 0x000001C98636DD60, 40 bytes long.
Data: < A7†É à}9†É > 10 41 37 86 C9 01 00 00 E0 7D 39 86 C9 01 00 00
{260} normal block at 0x000001C986374340, 16 bytes long.
Data: < P7†É > 80 50 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{259} normal block at 0x000001C986374480, 16 bytes long.
Data: <XP7†É > 58 50 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{258} normal block at 0x000001C98636C680, 32 bytes long.
Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
{257} normal block at 0x000001C9863745C0, 16 bytes long.
Data: <0P7†É > 30 50 37 86 C9 01 00 00 00 00 00 00 00 00 00 00
{256} normal block at 0x000001C986375030, 992 bytes long.
Data: <ÀE7†É Æ6†É > C0 45 37 86 C9 01 00 00 80 C6 36 86 C9 01 00 00
{92} normal block at 0x000001C98636BCC0, 32 bytes long.
Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
{91} normal block at 0x000001C9863673B0, 16 bytes long.
Data: < Ü6†É > 80 DC 36 86 C9 01 00 00 00 00 00 00 00 00 00 00
{90} normal block at 0x000001C98636DC80, 40 bytes long.
Data: <°s6†É À¼6†É > B0 73 36 86 C9 01 00 00 C0 BC 36 86 C9 01 00 00
{69} normal block at 0x000001C9863679F0, 16 bytes long.
Data: < êåhö > 80 EA E5 68 F6 7F 00 00 00 00 00 00 00 00 00 00
{68} normal block at 0x000001C9863679A0, 16 bytes long.
Data: <@éåhö > 40 E9 E5 68 F6 7F 00 00 00 00 00 00 00 00 00 00
{67} normal block at 0x000001C986367C20, 16 bytes long.
Data: <øWâhö > F8 57 E2 68 F6 7F 00 00 00 00 00 00 00 00 00 00
{66} normal block at 0x000001C9863677C0, 16 bytes long.
Data: <ØWâhö > D8 57 E2 68 F6 7F 00 00 00 00 00 00 00 00 00 00
{65} normal block at 0x000001C9863675E0, 16 bytes long.
Data: <P âhö > 50 04 E2 68 F6 7F 00 00 00 00 00 00 00 00 00 00
{64} normal block at 0x000001C986367130, 16 bytes long.
Data: <0 âhö > 30 04 E2 68 F6 7F 00 00 00 00 00 00 00 00 00 00
{63} normal block at 0x000001C9863676D0, 16 bytes long.
Data: <à âhö > E0 02 E2 68 F6 7F 00 00 00 00 00 00 00 00 00 00
{62} normal block at 0x000001C986367720, 16 bytes long.
Data: < âhö > 10 04 E2 68 F6 7F 00 00 00 00 00 00 00 00 00 00
{61} normal block at 0x000001C986366EB0, 16 bytes long.
Data: <p âhö > 70 04 E2 68 F6 7F 00 00 00 00 00 00 00 00 00 00
{60} normal block at 0x000001C986367770, 16 bytes long.
Data: < Ààhö > 18 C0 E0 68 F6 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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