Task 38643075
| Name | shp2_A20_A09_r0_5-QUICO_ATM_OpenFF23_NAGL_shp2-0-6-RND5018_0 |
| Workunit | 31589693 |
| Created | 7 May 2026, 10:42:34 UTC |
| Sent | 7 May 2026, 10:42:39 UTC |
| Report deadline | 12 May 2026, 10:42:39 UTC |
| Received | 7 May 2026, 15:20:25 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 623367 |
| Run time | 1 hours 5 min 39 sec |
| CPU time | 1 hours 4 min 3 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 12,066.94 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 827.89 MB |
| Peak swap size | 6.98 GB |
| Peak disk usage | 2.81 GB |
Stderr output
<core_client_version>8.2.11</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
10:14:34 (480): wrapper (7.9.26016): starting
10:14:34 (480): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A20_A09_0.pdb
QB_A20_A09_0.xml
QB_A20_A09.inpcrd
QB_A20_A09_input.yaml
QB_A20_A09.pdb
QB_A20_A09.prmtop
QB_A20_A09_sys.xml
run.bat
run.sh
10:14:36 (480): Library/usr/bin/tar.exe exited; CPU time 0.031250
10:14:36 (480): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\3\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\3\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "C:\ProgramData\BOINC\slots\3\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "C:\ProgramData\BOINC\slots\3\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "C:\ProgramData\BOINC\slots\3\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "C:\ProgramData\BOINC\slots\3\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "C:\ProgramData\BOINC\slots\3\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\3\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\3\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\3\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\3\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
11:19:11 (480): C:/Windows/system32/cmd.exe exited; CPU time 3843.375000
11:19:11 (480): app exit status: 0x16
11:19:11 (480): called boinc_finish(195)
0 bytes in 0 Free Blocks.
428 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 66150854 bytes.
Dumping objects ->
{3835585} normal block at 0x00000115E8704D70, 48 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835574} normal block at 0x00000115E8704C90, 48 bytes long.
Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835563} normal block at 0x00000115E8704C20, 48 bytes long.
Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61
{3835552} normal block at 0x00000115E8704BB0, 48 bytes long.
Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835541} normal block at 0x00000115E8704B40, 48 bytes long.
Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61
{3835510} normal block at 0x00000115EA4A75A0, 64 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835499} normal block at 0x00000115EA4BB240, 86 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
..\api\boinc_api.cpp(309) : {3835496} normal block at 0x00000115E86FE350, 8 bytes long.
Data: < Îè > 00 00 CE E8 15 01 00 00
{3834696} normal block at 0x00000115EA4BB600, 86 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
{3833945} normal block at 0x00000115E86FE5D0, 8 bytes long.
Data: <P¸rè > 50 B8 72 E8 15 01 00 00
..\zip\boinc_zip.cpp(122) : {304} normal block at 0x00000115E86FD250, 260 bytes long.
Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
{289} normal block at 0x00000115E86F5120, 80 bytes long.
Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C
{288} normal block at 0x00000115E8703810, 16 bytes long.
Data: <èFpè > E8 46 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{287} normal block at 0x00000115E8703D60, 16 bytes long.
Data: <ÀFpè > C0 46 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{286} normal block at 0x00000115E8701C60, 32 bytes long.
Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D
{285} normal block at 0x00000115E87039A0, 16 bytes long.
Data: < Fpè > 98 46 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{284} normal block at 0x00000115E8703CC0, 16 bytes long.
Data: <pFpè > 70 46 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{283} normal block at 0x00000115E8703400, 16 bytes long.
Data: <HFpè > 48 46 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{282} normal block at 0x00000115E8703EA0, 16 bytes long.
Data: < Fpè > 20 46 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{281} normal block at 0x00000115E87048A0, 48 bytes long.
Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F
{280} normal block at 0x00000115E8704120, 16 bytes long.
Data: <8ñnè > 38 F1 6E E8 15 01 00 00 00 00 00 00 00 00 00 00
{279} normal block at 0x00000115E87013C0, 32 bytes long.
Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69
{278} normal block at 0x00000115E8703A90, 16 bytes long.
Data: < ñnè > 10 F1 6E E8 15 01 00 00 00 00 00 00 00 00 00 00
{276} normal block at 0x00000115E8703C20, 16 bytes long.
Data: <èðnè > E8 F0 6E E8 15 01 00 00 00 00 00 00 00 00 00 00
{275} normal block at 0x00000115E87037C0, 16 bytes long.
Data: <Àðnè > C0 F0 6E E8 15 01 00 00 00 00 00 00 00 00 00 00
{274} normal block at 0x00000115E8703BD0, 16 bytes long.
Data: < ðnè > 98 F0 6E E8 15 01 00 00 00 00 00 00 00 00 00 00
{273} normal block at 0x00000115E8703680, 16 bytes long.
Data: <pðnè > 70 F0 6E E8 15 01 00 00 00 00 00 00 00 00 00 00
{272} normal block at 0x00000115E8704080, 16 bytes long.
Data: <Hðnè > 48 F0 6E E8 15 01 00 00 00 00 00 00 00 00 00 00
{271} normal block at 0x00000115E8701240, 32 bytes long.
Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55
{270} normal block at 0x00000115E8704030, 16 bytes long.
Data: < ðnè > 20 F0 6E E8 15 01 00 00 00 00 00 00 00 00 00 00
{269} normal block at 0x00000115E86EF020, 320 bytes long.
Data: <0@pè @ pè > 30 40 70 E8 15 01 00 00 40 12 70 E8 15 01 00 00
{268} normal block at 0x00000115E8703450, 16 bytes long.
Data: < Fpè > 00 46 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{267} normal block at 0x00000115E8703C70, 16 bytes long.
Data: <ØEpè > D8 45 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{266} normal block at 0x00000115E8701360, 32 bytes long.
Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65
{265} normal block at 0x00000115E8703EF0, 16 bytes long.
Data: <°Epè > B0 45 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{264} normal block at 0x00000115E8701BA0, 32 bytes long.
Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62
{263} normal block at 0x00000115E8703770, 16 bytes long.
Data: <øDpè > F8 44 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{262} normal block at 0x00000115E8703590, 16 bytes long.
Data: <ÐDpè > D0 44 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{261} normal block at 0x00000115E8704210, 16 bytes long.
Data: <¨Dpè > A8 44 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{260} normal block at 0x00000115E8703630, 16 bytes long.
Data: < Dpè > 80 44 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{259} normal block at 0x00000115E8703720, 16 bytes long.
Data: <XDpè > 58 44 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{258} normal block at 0x00000115E8703B30, 16 bytes long.
Data: <0Dpè > 30 44 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{256} normal block at 0x00000115E87035E0, 16 bytes long.
Data: < ínè > 20 ED 6E E8 15 01 00 00 00 00 00 00 00 00 00 00
{255} normal block at 0x00000115E86EED20, 40 bytes long.
Data: <à5pè  uJê > E0 35 70 E8 15 01 00 00 A0 75 4A EA 15 01 00 00
{254} normal block at 0x00000115E8703F40, 16 bytes long.
Data: < Dpè > 10 44 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{253} normal block at 0x00000115E8703950, 16 bytes long.
Data: <èCpè > E8 43 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{252} normal block at 0x00000115E8701C00, 32 bytes long.
Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
{251} normal block at 0x00000115E8703E00, 16 bytes long.
Data: <ÀCpè > C0 43 70 E8 15 01 00 00 00 00 00 00 00 00 00 00
{250} normal block at 0x00000115E87043C0, 992 bytes long.
Data: < >pè pè > 00 3E 70 E8 15 01 00 00 00 1C 70 E8 15 01 00 00
{86} normal block at 0x00000115E87016C0, 32 bytes long.
Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
{85} normal block at 0x00000115E86FE3F0, 16 bytes long.
Data: <àÄnè > E0 C4 6E E8 15 01 00 00 00 00 00 00 00 00 00 00
{84} normal block at 0x00000115E86EC4E0, 40 bytes long.
Data: <ðãoè À pè > F0 E3 6F E8 15 01 00 00 C0 16 70 E8 15 01 00 00
{63} normal block at 0x00000115E86FE940, 16 bytes long.
Data: < êz\ö > 80 EA 7A 5C F6 7F 00 00 00 00 00 00 00 00 00 00
{62} normal block at 0x00000115E86FE670, 16 bytes long.
Data: <@éz\ö > 40 E9 7A 5C F6 7F 00 00 00 00 00 00 00 00 00 00
{61} normal block at 0x00000115E86FE530, 16 bytes long.
Data: <øWw\ö > F8 57 77 5C F6 7F 00 00 00 00 00 00 00 00 00 00
{60} normal block at 0x00000115E86FE300, 16 bytes long.
Data: <ØWw\ö > D8 57 77 5C F6 7F 00 00 00 00 00 00 00 00 00 00
{59} normal block at 0x00000115E86FDF40, 16 bytes long.
Data: <P w\ö > 50 04 77 5C F6 7F 00 00 00 00 00 00 00 00 00 00
{58} normal block at 0x00000115E86FE850, 16 bytes long.
Data: <0 w\ö > 30 04 77 5C F6 7F 00 00 00 00 00 00 00 00 00 00
{57} normal block at 0x00000115E86FEA80, 16 bytes long.
Data: <à w\ö > E0 02 77 5C F6 7F 00 00 00 00 00 00 00 00 00 00
{56} normal block at 0x00000115E86FDEA0, 16 bytes long.
Data: < w\ö > 10 04 77 5C F6 7F 00 00 00 00 00 00 00 00 00 00
{55} normal block at 0x00000115E86FE260, 16 bytes long.
Data: <p w\ö > 70 04 77 5C F6 7F 00 00 00 00 00 00 00 00 00 00
{54} normal block at 0x00000115E86FE620, 16 bytes long.
Data: < Àu\ö > 18 C0 75 5C F6 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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