Task 38642193
| Name | cdk8_A02_A01_r0_4-QUICO_ATM_OpenFF23_NAGL_cdk8-3-6-RND2805_5 |
| Workunit | 31577591 |
| Created | 5 May 2026, 13:13:17 UTC |
| Sent | 5 May 2026, 13:13:21 UTC |
| Report deadline | 10 May 2026, 13:13:21 UTC |
| Received | 7 May 2026, 23:01:28 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 631657 |
| Run time | 10 hours 11 min 49 sec |
| CPU time | 10 hours 11 min 49 sec |
| Validate state | Valid |
| Credit | 750,000.00 |
| Device peak FLOPS | 22,073.86 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 1.30 GB |
| Peak swap size | 11.78 GB |
| Peak disk usage | 3.33 GB |
Stderr output
<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
09:31:46 (6608): wrapper (7.9.26016): starting
09:31:46 (6608): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A02_A01_0.pdb
QB_A02_A01_0.xml
QB_A02_A01.inpcrd
QB_A02_A01_input.yaml
QB_A02_A01.pdb
QB_A02_A01.prmtop
QB_A02_A01_sys.xml
run.bat
run.sh
09:31:48 (6608): Library/usr/bin/tar.exe exited; CPU time 0.015625
09:31:48 (6608): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\14\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\14\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {3835117} normal block at 0x000001596992DEE0, 8 bytes long.
Data: < iY > 00 00 D4 69 59 01 00 00
..\lib\diagnostics_win.cpp(417) : {3833958} normal block at 0x000001596991DA90, 1080 bytes long.
Data: < 2 > F4 32 00 00 CD CD CD CD 20 02 00 00 00 00 00 00
..\zip\boinc_zip.cpp(122) : {311} normal block at 0x0000015969921100, 260 bytes long.
Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
Object dump complete.
10:53:19 (39384): wrapper (7.9.26016): starting
10:53:19 (39384): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\14\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1463} normal block at 0x00000253DE9474E0, 8 bytes long.
Data: < S > 00 00 8F DE 53 02 00 00
..\lib\diagnostics_win.cpp(417) : {304} normal block at 0x00000253DE947EC0, 1080 bytes long.
Data: < 9 > 18 39 00 00 CD CD CD CD A8 01 00 00 00 00 00 00
Object dump complete.
12:33:56 (34576): wrapper (7.9.26016): starting
12:33:56 (34576): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\14\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1463} normal block at 0x000001C9A38A69E0, 8 bytes long.
Data: < > 00 00 C8 A3 C9 01 00 00
..\lib\diagnostics_win.cpp(417) : {304} normal block at 0x000001C9A38A70A0, 1080 bytes long.
Data: < b > D0 62 00 00 CD CD CD CD AC 01 00 00 00 00 00 00
Object dump complete.
15:12:36 (29148): wrapper (7.9.26016): starting
15:12:36 (29148): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\14\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1463} normal block at 0x000001DDDB5D6560, 8 bytes long.
Data: < S > 00 00 53 DB DD 01 00 00
..\lib\diagnostics_win.cpp(417) : {304} normal block at 0x000001DDDB5D7120, 1080 bytes long.
Data: < @ > B8 40 00 00 CD CD CD CD A8 01 00 00 00 00 00 00
Object dump complete.
15:27:03 (32232): wrapper (7.9.26016): starting
15:27:03 (32232): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\14\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1463} normal block at 0x000001DB7B116120, 8 bytes long.
Data: < ^{ > 00 00 5E 7B DB 01 00 00
..\lib\diagnostics_win.cpp(417) : {304} normal block at 0x000001DB7B1170A0, 1080 bytes long.
Data: < ~ > B0 7E 00 00 CD CD CD CD B0 01 00 00 00 00 00 00
Object dump complete.
16:25:19 (34992): wrapper (7.9.26016): starting
16:25:19 (34992): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\14\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1463} normal block at 0x00000182A8B76A60, 8 bytes long.
Data: < > 00 00 F5 A8 82 01 00 00
..\lib\diagnostics_win.cpp(417) : {304} normal block at 0x00000182A8B77120, 1080 bytes long.
Data: < 8 > BC 38 00 00 CD CD CD CD A8 01 00 00 00 00 00 00
Object dump complete.
17:46:50 (43864): wrapper (7.9.26016): starting
17:46:50 (43864): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\14\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1463} normal block at 0x000001E2A14B6BD0, 8 bytes long.
Data: < > 00 00 9A A1 E2 01 00 00
..\lib\diagnostics_win.cpp(417) : {304} normal block at 0x000001E2A14B70B0, 1080 bytes long.
Data: < a > B8 61 00 00 CD CD CD CD AC 01 00 00 00 00 00 00
Object dump complete.
10:21:25 (30820): wrapper (7.9.26016): starting
10:21:25 (30820): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\14\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1463} normal block at 0x0000025A00EA6450, 8 bytes long.
Data: < : Z > 00 00 3A 01 5A 02 00 00
..\lib\diagnostics_win.cpp(417) : {304} normal block at 0x0000025A00EA70B0, 1080 bytes long.
Data: < > DC 88 00 00 CD CD CD CD A8 01 00 00 00 00 00 00
Object dump complete.
16:06:13 (19048): wrapper (7.9.26016): starting
16:06:13 (19048): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\14\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1463} normal block at 0x00000288AF956A50, 8 bytes long.
Data: < > 00 00 F2 AF 88 02 00 00
..\lib\diagnostics_win.cpp(417) : {304} normal block at 0x00000288AF9570C0, 1080 bytes long.
Data: <4 > 34 A5 00 00 CD CD CD CD 8C 01 00 00 00 00 00 00
Object dump complete.
16:40:45 (612): wrapper (7.9.26016): starting
16:40:45 (612): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\14\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1463} normal block at 0x000002915CF05BC0, 8 bytes long.
Data: < 2] > 00 00 32 5D 91 02 00 00
..\lib\diagnostics_win.cpp(417) : {304} normal block at 0x000002915CF06F50, 1080 bytes long.
Data: <45 > 34 35 00 00 CD CD CD CD BC 01 00 00 00 00 00 00
Object dump complete.
19:59:27 (42844): wrapper (7.9.26016): starting
19:59:27 (42844): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\14\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1463} normal block at 0x000001B547505DA0, 8 bytes long.
Data: < G > 00 00 A2 47 B5 01 00 00
..\lib\diagnostics_win.cpp(417) : {304} normal block at 0x000001B547506AF0, 1080 bytes long.
Data: < > EC 9D 00 00 CD CD CD CD A8 01 00 00 00 00 00 00
Object dump complete.
23:41:06 (15628): wrapper (7.9.26016): starting
23:41:06 (15628): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\14\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1463} normal block at 0x0000022065BB6A40, 8 bytes long.
Data: < f > 00 00 14 66 20 02 00 00
..\lib\diagnostics_win.cpp(417) : {304} normal block at 0x0000022065BB70B0, 1080 bytes long.
Data: < > F0 A9 00 00 CD CD CD CD A8 01 00 00 00 00 00 00
Object dump complete.
23:48:55 (16560): wrapper (7.9.26016): starting
23:48:55 (16560): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\14\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1463} normal block at 0x000001E7F38760D0, 8 bytes long.
Data: < > 00 00 82 F3 E7 01 00 00
..\lib\diagnostics_win.cpp(417) : {304} normal block at 0x000001E7F38770A0, 1080 bytes long.
Data: <d > 64 92 00 00 CD CD CD CD A8 01 00 00 00 00 00 00
Object dump complete.
15:50:06 (9832): wrapper (7.9.26016): starting
15:50:06 (9832): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\14\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
tar: run.log: file changed as we read it
17:58:18 (9832): C:/Windows/system32/cmd.exe exited; CPU time 7659.296875
17:58:18 (9832): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 163814871 bytes.
Dumping objects ->
{1551} normal block at 0x0000019A90045440, 48 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{1540} normal block at 0x0000019A900452F0, 48 bytes long.
Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{1529} normal block at 0x0000019A90045280, 48 bytes long.
Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61
{1518} normal block at 0x0000019A90045050, 48 bytes long.
Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{1507} normal block at 0x0000019A90044FE0, 48 bytes long.
Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61
{1476} normal block at 0x0000019A90030490, 64 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
..\api\boinc_api.cpp(309) : {1463} normal block at 0x0000019A900463A0, 8 bytes long.
Data: < > 00 00 01 90 9A 01 00 00
{305} normal block at 0x0000019A90045DB0, 8 bytes long.
Data: <0m > 30 6D 04 90 9A 01 00 00
{296} normal block at 0x0000019A9002ED30, 80 bytes long.
Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C
{295} normal block at 0x0000019A90045D60, 16 bytes long.
Data: <8l > 38 6C 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{294} normal block at 0x0000019A900465D0, 16 bytes long.
Data: < l > 10 6C 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{293} normal block at 0x0000019A90040320, 32 bytes long.
Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D
{292} normal block at 0x0000019A90045B80, 16 bytes long.
Data: < k > E8 6B 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{291} normal block at 0x0000019A90046490, 16 bytes long.
Data: < k > C0 6B 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{290} normal block at 0x0000019A90045B30, 16 bytes long.
Data: < k > 98 6B 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{289} normal block at 0x0000019A90045AE0, 16 bytes long.
Data: <pk > 70 6B 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{288} normal block at 0x0000019A90044DB0, 48 bytes long.
Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F
{287} normal block at 0x0000019A90046170, 16 bytes long.
Data: < > B8 0E 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{286} normal block at 0x0000019A9003FD80, 32 bytes long.
Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69
{285} normal block at 0x0000019A90046120, 16 bytes long.
Data: < > 90 0E 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{283} normal block at 0x0000019A90046350, 16 bytes long.
Data: <h > 68 0E 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{282} normal block at 0x0000019A90046300, 16 bytes long.
Data: <@ > 40 0E 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{281} normal block at 0x0000019A900460D0, 16 bytes long.
Data: < > 18 0E 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{280} normal block at 0x0000019A90046030, 16 bytes long.
Data: < > F0 0D 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{279} normal block at 0x0000019A900462B0, 16 bytes long.
Data: < > C8 0D 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{278} normal block at 0x0000019A9003FD20, 32 bytes long.
Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55
{277} normal block at 0x0000019A90046710, 16 bytes long.
Data: < > A0 0D 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{276} normal block at 0x0000019A90040DA0, 320 bytes long.
Data: < g > 10 67 04 90 9A 01 00 00 20 FD 03 90 9A 01 00 00
{275} normal block at 0x0000019A90046440, 16 bytes long.
Data: <Pk > 50 6B 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{274} normal block at 0x0000019A90046580, 16 bytes long.
Data: <(k > 28 6B 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{273} normal block at 0x0000019A9003FFC0, 32 bytes long.
Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65
{272} normal block at 0x0000019A900463F0, 16 bytes long.
Data: < k > 00 6B 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{271} normal block at 0x0000019A9003FCC0, 32 bytes long.
Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62
{270} normal block at 0x0000019A90046260, 16 bytes long.
Data: <Hj > 48 6A 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{269} normal block at 0x0000019A90045A90, 16 bytes long.
Data: < j > 20 6A 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{268} normal block at 0x0000019A90045A40, 16 bytes long.
Data: < i > F8 69 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{267} normal block at 0x0000019A90045D10, 16 bytes long.
Data: < i > D0 69 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{266} normal block at 0x0000019A90046800, 16 bytes long.
Data: < i > A8 69 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{265} normal block at 0x0000019A90046210, 16 bytes long.
Data: < i > 80 69 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{263} normal block at 0x0000019A900466C0, 16 bytes long.
Data: <`S > 60 53 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{262} normal block at 0x0000019A90045360, 40 bytes long.
Data: < f > C0 66 04 90 9A 01 00 00 90 04 03 90 9A 01 00 00
{261} normal block at 0x0000019A900467B0, 16 bytes long.
Data: <`i > 60 69 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{260} normal block at 0x0000019A90046850, 16 bytes long.
Data: <8i > 38 69 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{259} normal block at 0x0000019A900402C0, 32 bytes long.
Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
{258} normal block at 0x0000019A90046670, 16 bytes long.
Data: < i > 10 69 04 90 9A 01 00 00 00 00 00 00 00 00 00 00
{257} normal block at 0x0000019A90046910, 992 bytes long.
Data: <pf > 70 66 04 90 9A 01 00 00 C0 02 04 90 9A 01 00 00
{93} normal block at 0x0000019A9003FC60, 32 bytes long.
Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
{92} normal block at 0x0000019A9003DC80, 16 bytes long.
Data: < > F0 D5 02 90 9A 01 00 00 00 00 00 00 00 00 00 00
{91} normal block at 0x0000019A9002D5F0, 40 bytes long.
Data: < ` > 80 DC 03 90 9A 01 00 00 60 FC 03 90 9A 01 00 00
{70} normal block at 0x0000019A9003D870, 16 bytes long.
Data: < > 80 EA DD D6 F7 7F 00 00 00 00 00 00 00 00 00 00
{69} normal block at 0x0000019A9003D6E0, 16 bytes long.
Data: <@ > 40 E9 DD D6 F7 7F 00 00 00 00 00 00 00 00 00 00
{68} normal block at 0x0000019A9003DCD0, 16 bytes long.
Data: < W > F8 57 DA D6 F7 7F 00 00 00 00 00 00 00 00 00 00
{67} normal block at 0x0000019A9003D5F0, 16 bytes long.
Data: < W > D8 57 DA D6 F7 7F 00 00 00 00 00 00 00 00 00 00
{66} normal block at 0x0000019A9003D7D0, 16 bytes long.
Data: <P > 50 04 DA D6 F7 7F 00 00 00 00 00 00 00 00 00 00
{65} normal block at 0x0000019A9003D910, 16 bytes long.
Data: <0 > 30 04 DA D6 F7 7F 00 00 00 00 00 00 00 00 00 00
{64} normal block at 0x0000019A9003D4B0, 16 bytes long.
Data: < > E0 02 DA D6 F7 7F 00 00 00 00 00 00 00 00 00 00
{63} normal block at 0x0000019A9003DE60, 16 bytes long.
Data: < > 10 04 DA D6 F7 7F 00 00 00 00 00 00 00 00 00 00
{62} normal block at 0x0000019A9003E040, 16 bytes long.
Data: <p > 70 04 DA D6 F7 7F 00 00 00 00 00 00 00 00 00 00
{61} normal block at 0x0000019A9003DB40, 16 bytes long.
Data: < > 18 C0 D8 D6 F7 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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