Task 38639605

Name cdk8_A07_A08_r0_5-QUICO_ATM_OpenFF23_NAGL_cdk8-3-6-RND6581_0
Workunit 31587133
Created 30 Apr 2026, 22:06:21 UTC
Sent 30 Apr 2026, 22:06:23 UTC
Report deadline 5 May 2026, 22:06:23 UTC
Received 1 May 2026, 18:45:04 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 613742
Run time 6 hours 2 min 48 sec
CPU time 6 hours 2 min 48 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 33,171.51 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 944.64 MB
Peak swap size 5.85 GB
Peak disk usage 3.27 GB

Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
15:44:06 (15252): wrapper (7.9.26016): starting
15:44:06 (15252): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A07_A08_0.pdb
QB_A07_A08_0.xml
QB_A07_A08.inpcrd
QB_A07_A08_input.yaml
QB_A07_A08.pdb
QB_A07_A08.prmtop
QB_A07_A08_sys.xml
run.bat
run.sh
15:44:08 (15252): Library/usr/bin/tar.exe exited; CPU time 0.000000
15:44:08 (15252): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\9\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\9\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
21:43:13 (15252): C:/Windows/system32/cmd.exe exited; CPU time 21768.078125
21:43:13 (15252): called boinc_finish(0)
0 bytes in 0 Free Blocks.
536 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 284205405 bytes.
Dumping objects ->
{3835233} normal block at 0x000002B610000CA0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835222} normal block at 0x000002B6100008B0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835211} normal block at 0x000002B6100011E0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835200} normal block at 0x000002B6100007D0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835189} normal block at 0x000002B610000E60, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835158} normal block at 0x000002B6100FBB40, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835147} normal block at 0x000002B60E5355A0, 140 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835144} normal block at 0x000002B60E4EB140, 8 bytes long.
 Data: <  J &#182;   > 00 00 4A 0E B6 02 00 00 
{3834542} normal block at 0x000002B60E535CF0, 140 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833957} normal block at 0x000002B60E4EBB40, 8 bytes long.
 Data: <@LM &#182;   > 40 4C 4D 0E B6 02 00 00 
..\zip\boinc_zip.cpp(122) : {310} normal block at 0x000002B60E4D4520, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x000002B60E4D6350, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{294} normal block at 0x000002B60E4EB2D0, 16 bytes long.
 Data: <&#200;&#191;N &#182;           > C8 BF 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000002B60E4EAE70, 16 bytes long.
 Data: <&#160;&#191;N &#182;           > A0 BF 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000002B60E4E7420, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{291} normal block at 0x000002B60E4EB0F0, 16 bytes long.
 Data: <x&#191;N &#182;           > 78 BF 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000002B60E4EB0A0, 16 bytes long.
 Data: <P&#191;N &#182;           > 50 BF 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000002B60E4EB050, 16 bytes long.
 Data: <(&#191;N &#182;           > 28 BF 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000002B60E4EB410, 16 bytes long.
 Data: < &#191;N &#182;           > 00 BF 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000002B60E4E6C30, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{286} normal block at 0x000002B60E4EB960, 16 bytes long.
 Data: <&#200;AM &#182;           > C8 41 4D 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000002B60E4E7B40, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{284} normal block at 0x000002B60E4EACE0, 16 bytes long.
 Data: <&#160;AM &#182;           > A0 41 4D 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000002B60E4EB820, 16 bytes long.
 Data: <xAM &#182;           > 78 41 4D 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000002B60E4EAE20, 16 bytes long.
 Data: <PAM &#182;           > 50 41 4D 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000002B60E4EB280, 16 bytes long.
 Data: <(AM &#182;           > 28 41 4D 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000002B60E4EB370, 16 bytes long.
 Data: < AM &#182;           > 00 41 4D 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000002B60E4EB230, 16 bytes long.
 Data: <&#216;@M &#182;           > D8 40 4D 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x000002B60E4E7A80, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{276} normal block at 0x000002B60E4EB780, 16 bytes long.
 Data: <&#176;@M &#182;           > B0 40 4D 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000002B60E4D40B0, 320 bytes long.
 Data: < &#183;N &#182;    zN &#182;   > 80 B7 4E 0E B6 02 00 00 80 7A 4E 0E B6 02 00 00 
{274} normal block at 0x000002B60E4EAF60, 16 bytes long.
 Data: <&#224;&#190;N &#182;           > E0 BE 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000002B60E4EBAF0, 16 bytes long.
 Data: <&#184;&#190;N &#182;           > B8 BE 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000002B60E4E74E0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{271} normal block at 0x000002B60E4EB640, 16 bytes long.
 Data: < &#190;N &#182;           > 90 BE 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000002B60E4E7360, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{269} normal block at 0x000002B60E4EAFB0, 16 bytes long.
 Data: <&#216;&#189;N &#182;           > D8 BD 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000002B60E4EB7D0, 16 bytes long.
 Data: <&#176;&#189;N &#182;           > B0 BD 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000002B60E4EAD80, 16 bytes long.
 Data: < &#189;N &#182;           > 88 BD 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000002B60E4EB1E0, 16 bytes long.
 Data: <`&#189;N &#182;           > 60 BD 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000002B60E4EADD0, 16 bytes long.
 Data: <8&#189;N &#182;           > 38 BD 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000002B60E4EB6E0, 16 bytes long.
 Data: < &#189;N &#182;           > 10 BD 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000002B60E4EAF10, 16 bytes long.
 Data: <`gN &#182;           > 60 67 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000002B60E4E6760, 40 bytes long.
 Data: < &#175;N &#182;   @&#187;  &#182;   > 10 AF 4E 0E B6 02 00 00 40 BB 0F 10 B6 02 00 00 
{260} normal block at 0x000002B60E4EBC30, 16 bytes long.
 Data: <&#240;&#188;N &#182;           > F0 BC 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000002B60E4EB190, 16 bytes long.
 Data: <&#200;&#188;N &#182;           > C8 BC 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x000002B60E4E7240, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{257} normal block at 0x000002B60E4EB730, 16 bytes long.
 Data: <&#160;&#188;N &#182;           > A0 BC 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x000002B60E4EBCA0, 992 bytes long.
 Data: <0&#183;N &#182;   @rN &#182;   > 30 B7 4E 0E B6 02 00 00 40 72 4E 0E B6 02 00 00 
{92} normal block at 0x000002B60E4E7300, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{91} normal block at 0x000002B60E4DF890, 16 bytes long.
 Data: < iN &#182;           > 90 69 4E 0E B6 02 00 00 00 00 00 00 00 00 00 00 
{90} normal block at 0x000002B60E4E6990, 40 bytes long.
 Data: < &#248;M &#182;    sN &#182;   > 90 F8 4D 0E B6 02 00 00 00 73 4E 0E B6 02 00 00 
{69} normal block at 0x000002B60E4DF2F0, 16 bytes long.
 Data: < &#234; &#193;&#247;           > 80 EA 17 C1 F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000002B60E4DFB60, 16 bytes long.
 Data: <@&#233; &#193;&#247;           > 40 E9 17 C1 F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000002B60E4DF2A0, 16 bytes long.
 Data: <&#248;W &#193;&#247;           > F8 57 14 C1 F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000002B60E4DFED0, 16 bytes long.
 Data: <&#216;W &#193;&#247;           > D8 57 14 C1 F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000002B60E4DF070, 16 bytes long.
 Data: <P  &#193;&#247;           > 50 04 14 C1 F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000002B60E4DF250, 16 bytes long.
 Data: <0  &#193;&#247;           > 30 04 14 C1 F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000002B60E4DFF70, 16 bytes long.
 Data: <&#224;  &#193;&#247;           > E0 02 14 C1 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000002B60E4DF4D0, 16 bytes long.
 Data: <   &#193;&#247;           > 10 04 14 C1 F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000002B60E4DF7F0, 16 bytes long.
 Data: <p  &#193;&#247;           > 70 04 14 C1 F7 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x000002B60E4DFE30, 16 bytes long.
 Data: < &#192; &#193;&#247;           > 18 C0 12 C1 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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