Task 38629675

Name cdk8_A19_A03_r0_4-QUICO_ATM_GAFF2_NAGL_cdk8-0-6-RND0759_1
Workunit 31577314
Created 25 Apr 2026, 6:26:28 UTC
Sent 25 Apr 2026, 6:26:34 UTC
Report deadline 30 Apr 2026, 6:26:34 UTC
Received 25 Apr 2026, 11:49:11 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 646979
Run time 3 hours 42 min 19 sec
CPU time 3 hours 21 min 29 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 83,077.92 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 971.80 MB
Peak swap size 10.55 GB
Peak disk usage 3.18 GB

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
17:03:43 (20820): wrapper (7.9.26016): starting
17:03:43 (20820): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A19_A03_0.pdb
QB_A19_A03_0.xml
QB_A19_A03.inpcrd
QB_A19_A03_input.yaml
QB_A19_A03.pdb
QB_A19_A03.prmtop
QB_A19_A03_sys.xml
run.bat
run.sh
17:03:44 (20820): Library/usr/bin/tar.exe exited; CPU time 0.000000
17:03:44 (20820): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
20:45:18 (20820): C:/Windows/system32/cmd.exe exited; CPU time 12089.562500
20:45:18 (20820): called boinc_finish(0)
0 bytes in 0 Free Blocks.
456 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 216238829 bytes.
Dumping objects ->
{3835581} normal block at 0x000002770B8C8690, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835570} normal block at 0x000002770B8C7E40, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835559} normal block at 0x0000027709765490, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835548} normal block at 0x00000277097650A0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835537} normal block at 0x0000027709764FC0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835506} normal block at 0x000002770B8D8380, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835495} normal block at 0x000002770B8ED220, 100 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835492} normal block at 0x000002770975D3F0, 8 bytes long.
 Data: <  &#195;	w   > 00 00 C3 09 77 02 00 00 
{3834767} normal block at 0x000002770B8EC960, 100 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3834057} normal block at 0x000002770975DFD0, 8 bytes long.
 Data: <&#176;&#216;t	w   > B0 D8 74 09 77 02 00 00 
..\zip\boinc_zip.cpp(122) : {312} normal block at 0x0000027709750BC0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x0000027709752780, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{296} normal block at 0x0000027709765C00, 16 bytes long.
 Data: <Hnv	w           > 48 6E 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x0000027709765BB0, 16 bytes long.
 Data: < nv	w           > 20 6E 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x00000277097615A0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{293} normal block at 0x00000277097668D0, 16 bytes long.
 Data: < mv	w           > F8 6D 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000027709766830, 16 bytes long.
 Data: <&#208;mv	w           > D0 6D 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000027709765C50, 16 bytes long.
 Data: <&#168;mv	w           > A8 6D 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000027709765CF0, 16 bytes long.
 Data: < mv	w           > 80 6D 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x0000027709765110, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{288} normal block at 0x00000277097667E0, 16 bytes long.
 Data: <H	u	w           > 48 09 75 09 77 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000027709761000, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{286} normal block at 0x0000027709765B60, 16 bytes long.
 Data: < 	u	w           > 20 09 75 09 77 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000027709766A10, 16 bytes long.
 Data: <  u	w           > F8 08 75 09 77 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000027709766A60, 16 bytes long.
 Data: <&#208; u	w           > D0 08 75 09 77 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000027709766510, 16 bytes long.
 Data: <&#168; u	w           > A8 08 75 09 77 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000027709766AB0, 16 bytes long.
 Data: <  u	w           > 80 08 75 09 77 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x00000277097662E0, 16 bytes long.
 Data: <X u	w           > 58 08 75 09 77 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000027709761300, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{278} normal block at 0x0000027709766100, 16 bytes long.
 Data: <0 u	w           > 30 08 75 09 77 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x0000027709750830, 320 bytes long.
 Data: < av	w     v	w   > 00 61 76 09 77 02 00 00 00 13 76 09 77 02 00 00 
{276} normal block at 0x0000027709765DE0, 16 bytes long.
 Data: <`mv	w           > 60 6D 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000027709766970, 16 bytes long.
 Data: <8mv	w           > 38 6D 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x00000277097613C0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{273} normal block at 0x00000277097666F0, 16 bytes long.
 Data: < mv	w           > 10 6D 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x0000027709761B40, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{271} normal block at 0x00000277097664C0, 16 bytes long.
 Data: <Xlv	w           > 58 6C 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x00000277097669C0, 16 bytes long.
 Data: <0lv	w           > 30 6C 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x0000027709765F20, 16 bytes long.
 Data: < lv	w           > 08 6C 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000027709765F70, 16 bytes long.
 Data: < kv	w           > E0 6B 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000027709766650, 16 bytes long.
 Data: <&#184;kv	w           > B8 6B 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x00000277097665B0, 16 bytes long.
 Data: < kv	w           > 90 6B 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000027709766290, 16 bytes long.
 Data: < Qv	w           > 80 51 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x0000027709765180, 40 bytes long.
 Data: < bv	w       w   > 90 62 76 09 77 02 00 00 80 83 8D 0B 77 02 00 00 
{262} normal block at 0x0000027709765D40, 16 bytes long.
 Data: <pkv	w           > 70 6B 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x0000027709766740, 16 bytes long.
 Data: <Hkv	w           > 48 6B 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x0000027709761960, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{259} normal block at 0x0000027709765ED0, 16 bytes long.
 Data: < kv	w           > 20 6B 76 09 77 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x0000027709766B20, 992 bytes long.
 Data: <&#208;^v	w   ` v	w   > D0 5E 76 09 77 02 00 00 60 19 76 09 77 02 00 00 
{94} normal block at 0x0000027709760F40, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{93} normal block at 0x000002770975D990, 16 bytes long.
 Data: <&#208; t	w           > D0 E4 74 09 77 02 00 00 00 00 00 00 00 00 00 00 
{92} normal block at 0x000002770974E4D0, 40 bytes long.
 Data: < &#217;u	w   @ v	w   > 90 D9 75 09 77 02 00 00 40 0F 76 09 77 02 00 00 
{69} normal block at 0x000002770975DB20, 16 bytes long.
 Data: <  &#213;             > 80 EA D5 18 F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000002770975D9E0, 16 bytes long.
 Data: <@ &#213;             > 40 E9 D5 18 F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000002770975D8F0, 16 bytes long.
 Data: < W&#210;             > F8 57 D2 18 F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000002770975D800, 16 bytes long.
 Data: <&#216;W&#210;             > D8 57 D2 18 F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000002770975E160, 16 bytes long.
 Data: <P &#210;             > 50 04 D2 18 F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000002770975D7B0, 16 bytes long.
 Data: <0 &#210;             > 30 04 D2 18 F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000002770975DF80, 16 bytes long.
 Data: <  &#210;             > E0 02 D2 18 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000002770975D350, 16 bytes long.
 Data: <  &#210;             > 10 04 D2 18 F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000002770975D5D0, 16 bytes long.
 Data: <p &#210;             > 70 04 D2 18 F7 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x000002770975D850, 16 bytes long.
 Data: < &#192;&#208;             > 18 C0 D0 18 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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