Task 38629145

Name cdk8_A28_A09_r0_4-QUICO_ATM_OpenFF23_NAGL_cdk8-2-6-RND8664_0
Workunit 31578677
Created 25 Apr 2026, 1:24:51 UTC
Sent 25 Apr 2026, 1:25:14 UTC
Report deadline 30 Apr 2026, 1:25:14 UTC
Received 25 Apr 2026, 21:56:02 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 651854
Run time 10 hours 47 min 22 sec
CPU time 10 hours 47 min 22 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 11,617.98 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 948.77 MB
Peak swap size 7.24 GB
Peak disk usage 3.27 GB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
13:15:48 (22776): wrapper (7.9.26016): starting
13:15:48 (22776): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A28_A09_0.pdb
QB_A28_A09_0.xml
QB_A28_A09.inpcrd
QB_A28_A09_input.yaml
QB_A28_A09.pdb
QB_A28_A09.prmtop
QB_A28_A09_sys.xml
run.bat
run.sh
13:15:50 (22776): Library/usr/bin/tar.exe exited; CPU time 0.000000
13:15:50 (22776): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
23:55:21 (22776): C:/Windows/system32/cmd.exe exited; CPU time 38842.406250
23:55:21 (22776): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 479612365 bytes.
Dumping objects ->
{3835364} normal block at 0x0000021E93B7CFC0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835353} normal block at 0x0000021E91DF5590, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835342} normal block at 0x0000021E91DF5440, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835331} normal block at 0x0000021E91DF53D0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835320} normal block at 0x0000021E91DF51A0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835289} normal block at 0x0000021E93BC5FF0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835276} normal block at 0x0000021E91DEDA30, 8 bytes long.
 Data: <  +&#146;    > 00 00 2B 92 1E 02 00 00 
{3833961} normal block at 0x0000021E91DED7B0, 8 bytes long.
 Data: < &#217;&#221;&#145;    > 20 D9 DD 91 1E 02 00 00 
..\zip\boinc_zip.cpp(122) : {312} normal block at 0x0000021E91DE10E0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x0000021E91DE2560, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{296} normal block at 0x0000021E91DF6730, 16 bytes long.
 Data: <&#216;n&#223;&#145;            > D8 6E DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x0000021E91DF5E70, 16 bytes long.
 Data: <&#176;n&#223;&#145;            > B0 6E DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x0000021E91DEF790, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{293} normal block at 0x0000021E91DF6500, 16 bytes long.
 Data: < n&#223;&#145;            > 88 6E DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000021E91DF5BF0, 16 bytes long.
 Data: <`n&#223;&#145;            > 60 6E DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000021E91DF6B40, 16 bytes long.
 Data: <8n&#223;&#145;            > 38 6E DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000021E91DF5DD0, 16 bytes long.
 Data: < n&#223;&#145;            > 10 6E DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x0000021E91DF5600, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{288} normal block at 0x0000021E91DF6460, 16 bytes long.
 Data: < &#244;&#221;&#145;            > 88 F4 DD 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000021E91DF0150, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{286} normal block at 0x0000021E91DF6410, 16 bytes long.
 Data: <`&#244;&#221;&#145;            > 60 F4 DD 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000021E91DF65A0, 16 bytes long.
 Data: <8&#244;&#221;&#145;            > 38 F4 DD 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000021E91DF5D30, 16 bytes long.
 Data: < &#244;&#221;&#145;            > 10 F4 DD 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000021E91DF6050, 16 bytes long.
 Data: <&#232;&#243;&#221;&#145;            > E8 F3 DD 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000021E91DF6A50, 16 bytes long.
 Data: <&#192;&#243;&#221;&#145;            > C0 F3 DD 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000021E91DF6A00, 16 bytes long.
 Data: < &#243;&#221;&#145;            > 98 F3 DD 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000021E91DF01B0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{278} normal block at 0x0000021E91DF66E0, 16 bytes long.
 Data: <p&#243;&#221;&#145;            > 70 F3 DD 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x0000021E91DDF370, 320 bytes long.
 Data: <&#224;f&#223;&#145;    &#176; &#223;&#145;    > E0 66 DF 91 1E 02 00 00 B0 01 DF 91 1E 02 00 00 
{276} normal block at 0x0000021E91DF5FB0, 16 bytes long.
 Data: <&#240;m&#223;&#145;            > F0 6D DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000021E91DF5F10, 16 bytes long.
 Data: <&#200;m&#223;&#145;            > C8 6D DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x0000021E91DF00F0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{273} normal block at 0x0000021E91DF65F0, 16 bytes long.
 Data: <&#160;m&#223;&#145;            > A0 6D DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x0000021E91DF0330, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{271} normal block at 0x0000021E91DF6370, 16 bytes long.
 Data: <&#232;l&#223;&#145;            > E8 6C DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000021E91DF5C90, 16 bytes long.
 Data: <&#192;l&#223;&#145;            > C0 6C DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x0000021E91DF69B0, 16 bytes long.
 Data: < l&#223;&#145;            > 98 6C DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000021E91DF6AF0, 16 bytes long.
 Data: <pl&#223;&#145;            > 70 6C DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000021E91DF62D0, 16 bytes long.
 Data: <Hl&#223;&#145;            > 48 6C DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x0000021E91DF5E20, 16 bytes long.
 Data: < l&#223;&#145;            > 20 6C DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000021E91DF5C40, 16 bytes long.
 Data: <0Q&#223;&#145;            > 30 51 DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x0000021E91DF5130, 40 bytes long.
 Data: <@\&#223;&#145;    &#240;_&#188;&#147;    > 40 5C DF 91 1E 02 00 00 F0 5F BC 93 1E 02 00 00 
{262} normal block at 0x0000021E91DF6550, 16 bytes long.
 Data: < l&#223;&#145;            > 00 6C DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x0000021E91DF63C0, 16 bytes long.
 Data: <&#216;k&#223;&#145;            > D8 6B DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x0000021E91DEFA30, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{259} normal block at 0x0000021E91DF5D80, 16 bytes long.
 Data: <&#176;k&#223;&#145;            > B0 6B DF 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x0000021E91DF6BB0, 992 bytes long.
 Data: < ]&#223;&#145;    0&#250;&#222;&#145;    > 80 5D DF 91 1E 02 00 00 30 FA DE 91 1E 02 00 00 
{94} normal block at 0x0000021E91DEFDF0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{93} normal block at 0x0000021E91DED490, 16 bytes long.
 Data: < &#212;&#221;&#145;            > 80 D4 DD 91 1E 02 00 00 00 00 00 00 00 00 00 00 
{92} normal block at 0x0000021E91DDD480, 40 bytes long.
 Data: < &#212;&#222;&#145;    &#240;&#253;&#222;&#145;    > 90 D4 DE 91 1E 02 00 00 F0 FD DE 91 1E 02 00 00 
{71} normal block at 0x0000021E91DED760, 16 bytes long.
 Data: < &#234; 8&#246;           > 80 EA 08 38 F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x0000021E91DEDCB0, 16 bytes long.
 Data: <@&#233; 8&#246;           > 40 E9 08 38 F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x0000021E91DED620, 16 bytes long.
 Data: <&#248;W 8&#246;           > F8 57 05 38 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x0000021E91DED710, 16 bytes long.
 Data: <&#216;W 8&#246;           > D8 57 05 38 F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x0000021E91DED4E0, 16 bytes long.
 Data: <P  8&#246;           > 50 04 05 38 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000021E91DEDC60, 16 bytes long.
 Data: <0  8&#246;           > 30 04 05 38 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000021E91DEDBC0, 16 bytes long.
 Data: <&#224;  8&#246;           > E0 02 05 38 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000021E91DEDAD0, 16 bytes long.
 Data: <   8&#246;           > 10 04 05 38 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000021E91DEDB20, 16 bytes long.
 Data: <p  8&#246;           > 70 04 05 38 F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x0000021E91DED440, 16 bytes long.
 Data: < &#192; 8&#246;           > 18 C0 03 38 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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